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Publications

Publications by CTM

2016

The breast cancer conservative treatment. Cosmetic results - BCCT.core - Software for objective assessment of esthetic outcome in breast cancer conservative treatment: A narrative review

Authors
Cardoso, MJ; Cardoso, JS; Oliveira, HP; Gouveia, P;

Publication
COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

Abstract
Background and objective: Cosmetic outcome of breast cancer conservative treatment (BCCT) remains without a standard evaluation method. Subjective methods, in spite of their low reproducibility, continue to be the most frequently used. Objective methods, although more reproducible, seem unable to translate all the subtleties involved in cosmetic outcome. The breast cancer conservative treatment cosmetic results (BCCT. core) software was developed in 2007 to try to overcome these pitfalls. The software is a semi-automatic objective tool that evaluates asymmetry, color differences and scar visibility using patient's digital pictures. The purpose of this work is to review the use of the BCCT. core software since its availability in 2007 and to put forward future developments. Methods: All the online requests for BCCT. core use were registered from June 2007 to December 2014. For each request the department, city and country as well as user intention (clinical use/research or both) were questioned. A literature search was performed in Medline, Google Scholar and ISI Web of Knowledge for all publications using and citing "BCCT.core". Results: During this period 102 centers have requested the software essentially for clinical use. The BCCT. core software was used in 19 full published papers and in 29 conference abstracts. Conclusions: The BCCT. core is a user friendly semi-automatic method for the objective evaluation of BCCT. The number of online requests and publications have been steadily increasing turning this computer program into the most frequently used tool for the objective cosmetic evaluation of BCCT.

2016

Breast Conserving Surgery Outcome Prediction: A Patient-Specific, Integrated Multi-modal Imaging and Mechano-Biological Modelling Framework

Authors
Eiben, B; Lacher, R; Vavourakis, V; Hipwell, JH; Stoyanov, D; Williams, NR; Sabczynski, J; Buelow, T; Kutra, D; Meetz, K; Young, S; Barschdorf, H; Oliveira, HP; Cardoso, JS; Monteiro, JP; Zolfagharnasab, H; Sinkus, R; Gouveia, P; Liefers, GJ; Molenkamp, B; van de Velde, CJH; Hawkes, DJ; Cardoso, MJ; Keshtgar, M;

Publication
BREAST IMAGING, IWDM 2016

Abstract
Patient-specific surgical predictions of Breast Conserving Therapy, through mechano-biological simulations, could inform the shared decision making process between clinicians and patients by enabling the impact of different surgical options to be visualised. We present an overview of our processing workflow that integrates MR images and three dimensional optical surface scans into a personalised model. Utilising an interactively generated surgical plan, a multi-scale open source finite element solver is employed to simulate breast deformity based on interrelated physiological and biomechanical processes that occur post surgery. Our outcome predictions, based on the pre-surgical imaging, were validated by comparing the simulated outcome with follow-up surface scans of four patients acquired 6 to 12 months post-surgery. A mean absolute surface distance of 3.3mm between the follow-up scan and the simulation was obtained.

2016

Long-range trajectories from global and local motion representations

Authors
Pereira, EM; Cardoso, JS; Morla, R;

Publication
JOURNAL OF VISUAL COMMUNICATION AND IMAGE REPRESENTATION

Abstract
Motion is a fundamental cue for scene analysis and human activity understanding in videos. It can be encoded in trajectories for tracking objects and for action recognition, or in form of flow to address behavior analysis in crowded scenes. Each approach can only be applied on limited scenarios. We propose a motion-based system that represents the spatial and temporal features of the flow in terms of I ong-range trajectories. The novelty resides on the system formulation, its generic approach to handle scene variability and motion variations, motion integration from local and global representations, and the resulting long-range trajectories that overcome trajectory-based approach problems. We report the results and conclusions that state its pertinence on different scenarios, comparing and correlating the extracted trajectories of individual pedestrians, manually annotated. We also propose an evaluation framework and stress the diverse system characteristics that can be used for human activity tasks, namely on motion segmentation.

2016

A Realistic Evaluation of Iris Presentation Attack Detection

Authors
Sequeira, AF; Thavalengal, S; Ferryman, J; Corcoran, P; Cardoso, JS;

Publication
2016 39TH INTERNATIONAL CONFERENCE ON TELECOMMUNICATIONS AND SIGNAL PROCESSING (TSP)

Abstract
Iris liveness detection methods have been developed to overcome the vulnerability of iris biometric systems to spoofing attacks. In the literature, it is typically assumed that a known attack modality will be perpetrated. Then liveness models are designed using labelled samples from both real/live and fake/spoof distributions, the latter derived from the assumed attack modality. In this work it is argued that a comprehensive modelling of the spoof samples is not possible in a real-world scenario where the attack modality cannot be known with a high degree of certainty. In fact making this assumption will render the liveness detection system more vulnerable to attacks that were not included in the original training. To provide a more realistic evaluation, this work proposes: a) testing the binary models with unknown spoof samples that were not present in the training step; b) the use of a single-class classification designing the classifier by modelling only the distribution of live samples. The results obtained support the assertion that many evaluation methods from the literature are misleading and may lead to optimistic estimates of the robustness of liveness detection in practical use cases.

2016

A Comparative Analysis of Deep and Shallow Features for Multimodal Face Recognition in a Novel RGB-D-IR Dataset

Authors
Freitas, T; Alves, PG; Carpinteiro, C; Rodrigues, J; Fernandes, M; Castro, M; Monteiro, JC; Cardoso, JS;

Publication
Advances in Visual Computing - 12th International Symposium, ISVC 2016, Las Vegas, NV, USA, December 12-14, 2016, Proceedings, Part I

Abstract
With new trends like 3D and deep learning alternatives for face recognition becoming more popular, it becomes essential to establish a complete benchmark for the evaluation of such algorithms, in a wide variety of data sources and non-ideal scenarios. We propose a new RGB-depth-infrared (RGB-D-IR) dataset, RealFace, acquired with the novel Intel® RealSense TM collection of sensors, and characterized by multiple variations in pose, lighting and disguise. As baseline for future works, we assess the performance of multiple deep and “shallow” feature descriptors. We conclude that our dataset presents some relevant challenges and that deep feature descriptors present both higher robustness in RGB images, as well as an interesting margin for improvement in alternative sources, such as depth and IR. © Springer International Publishing AG 2016.

2016

Learning and Ensembling Lexicographic Preference Trees with Multiple Kernels

Authors
Fernandes, K; Cardoso, JS; Palacios, H;

Publication
2016 INTERNATIONAL JOINT CONFERENCE ON NEURAL NETWORKS (IJCNN)

Abstract
We study the problem of learning lexicographic preferences on multiattribute domains, and propose Rankdom Forests as a compact way to express preferences in learning to rank scenarios. We start generalizing Conditional Lexicographic Preference Trees by introducing multiple kernels in order to handle non-categorical attributes. Then, we define a learning strategy for inferring lexicographic rankers from partial pairwise comparisons between options. Finally, a Lexicographic Ensemble is introduced to handle multiple weak partial rankers, being Rankdom Forests one of these ensembles. We tested the performance of the proposed method using several datasets and obtained competitive results when compared with other lexicographic rankers.

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