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Publications

Publications by HASLab

2024

Mastering Artifact Correction in Neuroimaging Analysis: A Retrospective Approach

Authors
Oliveira, A; Cepa, B; Brito, C; Sousa, A;

Publication

Abstract
The correction of artifacts in Magnetic Resonance Imaging (MRI) is increasingly relevant as voluntary and involuntary artifacts can hinder data acquisition. Reverting from corrupted to artifact-free images is a complex task. Deep Learning (DL) models have been employed to preserve data characteristics and to identify and correct those artifacts. We propose MOANA, a novel DL-based solution to correct artifacts in multi-contrast brain MRI scans. MOANA offers two models: the simulation and the correction models. The simulation model introduces perturbations similar to those occurring in an exam while preserving the original image as ground truth; this is required as publicly available datasets rarely have motion-corrupted images. It allows the addition of three types of artifacts with different degrees of severity. The DL-based correction model adds a fourth contrast to state-of-the-art solutions while improving the overall performance of the models. MOANA achieved the highest results in the FLAIR contrast, with a Structural Similarity Index Measure (SSIM) of 0.9803 and a Normalized Mutual Information (NMI) of 0.8030. With this, the MOANA model can correct large volumes of images in less time and adapt to different levels of artifact severity, allowing for better diagnosis.

2024

MAC: An Artifact Correction Framework for Brain MRI based on Deep Neural Networks

Authors
Oliveira, A; Cepa, B; Brito, C; Sousa, A;

Publication

Abstract
AbstractThe correction of artifacts in Magnetic Resonance Imaging (MRI) is crucial due to physiological phenomena and technical issues affecting diagnostic quality. Reverting from corrupted to artifact-free images is a complex task. Deep Learning (DL) models have been employed to preserve data characteristics and to identify and correct those artifacts. We proposeMAC, a novel DL-based solution to correct artifacts in multi-contrast brain MRI scans.MACoffers two models: the simulation and the correction models. The simulation model introduces perturbations similar to those occurring in an exam while preserving the original image as ground truth; this is required as publicly available datasets rarely have motion-corrupted images. It allows the addition of three types of artifacts with different degrees of severity. The DL-based correction model adds a fourth contrast to state-of-the-art solutions while improving the overall performance of the models.MACachieved the highest results in the FLAIR contrast, with a Structural Similarity Index Measure (SSIM) of 0.9803 and a Normalized Mutual Information (NMI) of 0.8030. Moreover, the model reduced training time by 63% compared to its predecessor.MACmodel can correct large volumes of images faster and adapt to different levels of artifact severity than current state-ofthe-art models, allowing for better diagnosis.

2024

Berry: A code for the differentiation of Bloch wavefunctions from DFT calculations

Authors
Reascos, L; Carneiro, F; Pereira, A; Castro, NF; Ribeiro, RM;

Publication
COMPUTER PHYSICS COMMUNICATIONS

Abstract
Density functional calculation of electronic structures of materials is one of the most used techniques in theoretical solid state physics. These calculations retrieve single electron wavefunctions and their eigenenergies. The berry suite of programs amplifies the usefulness of DFT by ordering the eigenstates in analytic bands, allowing the differentiation of the wavefunctions in reciprocal space. It can then calculate Berry connections and curvatures and the second harmonic generation conductivity. The berry software is implemented for two dimensional materials and was tested in hBN and InSe. In the near future, more properties and functionalities are expected to be added.Program summary Program Title: berry CPC Library link to program files: https://doi .org /10 .17632 /mpbbksz2t7 .1 Developer's repository link: https://github .com /ricardoribeiro -2020 /berry Licensing provisions: MIT Programming language: Python3 Nature of problem: Differentiation of Bloch wavefunctions in reciprocal space, numerically obtained from a DFT software, applied to two dimensional materials. This enables the numeric calculation of material's properties such as Berry geometries and Second Harmonic conductivity. Solution method: Extracts Kohn-Sham functions from a DFT calculation, orders them by analytic bands using graph and AI methods and calculates the gradient of the wavefunctions along an electronic band. Additional comments including restrictions and unusual features: Applies only to two dimensional materials, and only imports Kohn-Sham functions from Quantum Espresso package.

2024

Bare PAKE: Universally Composable Key Exchange from Just Passwords

Authors
Barbosa, M; Gellert, K; Hesse, J; Jarecki, S;

Publication
ADVANCES IN CRYPTOLOGY - CRYPTO 2024, PT II

Abstract
In the past three decades, an impressive body of knowledge has been built around secure and private password authentication. In particular, secure password-authenticated key exchange (PAKE) protocols require only minimal overhead over a classical Diffie-Hellman key exchange. PAKEs are also known to fulfill strong composable security guarantees that capture many password-specific concerns such as password correlations or password mistyping, to name only a few. However, to enjoy both round-optimality and strong security, applications of PAKE protocols must provide unique session and participant identifiers. If such identifiers are not readily available, they must be agreed upon at the cost of additional communication flows, a fact which has been met with incomprehension among practitioners, and which hindered the adoption of provably secure password authentication in practice. In this work, we resolve this issue by proposing a new paradigm for truly password-only yet securely composable PAKE, called bare PAKE. We formally prove that two prominent PAKE protocols, namely CPace and EKE, can be cast as bare PAKEs and hence do not require pre-agreement of anything else than a password. Our bare PAKE modeling further allows to investigate a novel reusability property of PAKEs, i.e., whether n(2) pairwise keys can be exchanged from only n messages, just as the Diffie-Hellman non-interactive key exchange can do in a public-key setting. As a side contribution, this add-on property of bare PAKEs leads us to observe that some previous PAKE constructions relied on unnecessarily strong, reusable building blocks. By showing that non-reusable tools suffice for standard PAKE, we open a new path towards round-optimal post-quantum secure password-authenticated key exchange.

2024

C'est très CHIC: A compact password-authenticated key exchange from lattice-based KEM

Authors
Arriaga, A; Barbosa, M; Jarecki, S; Skrobot, M;

Publication
IACR Cryptol. ePrint Arch.

Abstract

2024

X-Wing: The Hybrid KEM You've Been Looking For

Authors
Barbosa, M; Connolly, D; Duarte, JD; Kaiser, A; Schwabe, P; Varner, K; Westerbaan, B;

Publication
IACR Cryptol. ePrint Arch.

Abstract

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