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Publications

Publications by LIAAD

2017

Time-dependent genetic effects on gene expression implicate aging processes

Authors
Bryois, J; Buil, A; Ferreira, PG; Panousis, NI; Brown, AA; Viñuela, A; Planchon, A; Bielser, D; Small, K; Spector, T; Dermitzakis, ET;

Publication
Genome Research

Abstract
Gene expression is dependent on genetic and environmental factors. In the last decade, a large body of research has significantly improved our understanding of the genetic architecture of gene expression. However, it remains unclear whether genetic effects on gene expression remain stable over time. Here, we show, using longitudinal whole-blood gene expression data from a twin cohort, that the genetic architecture of a subset of genes is unstable over time. In addition, we identified 2213 genes differentially expressed across time points that we linked with aging within and across studies. Interestingly, we discovered that most differentially expressed genes were affected by a subset of 77 putative causal genes. Finally, we observed that putative causal genes and down-regulated genes were affected by a loss of genetic control between time points. Taken together, our data suggest that instability in the genetic architecture of a subset of genes could lead to widespread effects on the transcriptome with an aging signature. ©2017 Bryois et al.

2017

ARFIMA-GARCH modeling of HRV: Clinical application in acute brain injury

Authors
Almeida, R; Dias, C; Silva, ME; Rocha, AP;

Publication
Complexity and Nonlinearity in Cardiovascular Signals

Abstract
In the last decade, several HRV based novel methodologies for describing and assessing heart rate dynamics have been proposed in the literature with the aim of risk assessment. Such methodologies attempt to describe the non-linear and complex characteristics of HRV, and hereby the focus is in two of these characteristics, namely long memory and heteroscedasticity with variance clustering. The ARFIMA-GARCH modeling considered here allows the quantification of long range correlations and time-varying volatility. ARFIMA-GARCH HRV analysis is integrated with multimodal brain monitoring in several acute cerebral phenomena such as intracranial hypertension, decompressive craniectomy and brain death. The results indicate that ARFIMA-GARCH modeling appears to reflect changes in Heart Rate Variability (HRV) dynamics related both with the Acute Brain Injury (ABI) and the medical treatments effects. © 2017, Springer International Publishing AG.

2017

Modelling spatio-temporal data with multiple seasonalities: The NO2 Portuguese case

Authors
Monteiro, A; Menezes, R; Silva, ME;

Publication
SPATIAL STATISTICS

Abstract
This study aims at characterizing the spatial and temporal dynamics of spatio-temporal data sets, characterized by high resolution in the temporal dimension which are becoming the norm rather than the exception in many application areas, namely environmental modelling. In particular, air pollution data, such as NO2 concentration levels, often incorporate also multiple recurring patterns in time imposed by social habits, anthropogenic activities and meteorological conditions. A two-stage modelling approach is proposed which combined with a block bootstrap procedure correctly assesses uncertainty in parameters estimates and produces reliable confidence regions for the space-time phenomenon under study. The methodology provides a model that is satisfactory in terms of goodness of fit, interpretability, parsimony, prediction and forecasting capability and computational costs. The proposed framework is potentially useful for scenario drawing in many areas, including assessment of environmental impact and environmental policies, and in a myriad applications to other research fields.

2017

A rule-based DSS for transforming Automatically-generated Alignments into Information Integration Alignments

Authors
Gouveia, A; Silva, N; Martins, P;

Publication
19TH INTERNATIONAL CONFERENCE ON INFORMATION INTEGRATION AND WEB-BASED APPLICATIONS & SERVICES (IIWAS2017)

Abstract
Analysis of automatically-generated alignments shows that ambiguous situations are quite common, preventing their application in scenarios demanding high quality and completeness, such ontology mediation (e.g. data transformation and information/knowledge integration). Even the best-performing alignment needs to be manually corrected, completed and verified before application. In this paper, we propose a decision support system (DSS) based in a general-purpose rule engine that assists the expert on improving and completing the automatically-generated alignments into fully-fledged alignments, balancing the precision and recall of the system with the user participation in the process. For that, the rules capture the preconditions (existing facts) and the actions to solve each (ambiguous) alignment scenario, in which the expert decision will be adopted in further automatic decisions. The evaluation of the proposed DSS shows the gain in reducing the need for expert's decisions while increasing the accuracy of the alignments. © 2017 Copyright is held by the owner/author(s).

2017

Rule-based System Enriched with a Folksonomy-based Matcher for Generating Information Integration Alignments

Authors
Gouveia, A; Silva, N; Martins, P;

Publication
Proceedings of the 9th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management - (Volume 2), Funchal, Madeira, Portugal, November 1-3, 2017.

Abstract
Ontology matchers establish correspondences between ontologies to enable knowledge from different sources and domains to be used in ontology mediation tasks (e.g. data transformation and information/ knowledge integration) in many ways. While these processes demand great quality alignments, even the best-performing alignment needs to be corrected and completed before application. In this paper, we propose a rule-based system that improves and completes the automatically-generated alignments into fullyfledged alignments. For that, the rules capture the pre-conditions (existing facts) and the actions to solve each (ambiguous) scenario, in which automatic decisions supported by a folksonomy-based matcher are adopted. The evaluation of the proposed system shows the increasing accuracy of the alignments.

2017

Development of flexible languages for scenario and team description in multirobot missions

Authors
Silva, DC; Abreu, PH; Reis, LP; Oliveira, E;

Publication
AI EDAM-ARTIFICIAL INTELLIGENCE FOR ENGINEERING DESIGN ANALYSIS AND MANUFACTURING

Abstract
The work described in this paper is part of the development of a framework to support the joint execution of cooperative missions by a group of vehicles, in a simulated, augmented, or real environment. Such a framework brings forward the need for formal languages in which to specify the vehicles that compose a team, the scenario in which they will operate, and the mission to be performed. This paper introduces the Scenario Description Language (SDL) and the Team Description Language (TDL), two Extensible Markup Language based dialects that compose the static components necessary for representing scenario and mission knowledge. SDL provides a specification of physical scenario and global operational constraints, while TDL defines the team of vehicles, as well as team-specific operational restrictions. The dialects were defined using Extensible Markup Language schemas, with all required information being integrated in the definitions. An interface was developed and incorporated into the framework, allowing for the creation and edition of SDL and TDL files. Once the information is specified, it can be used in the framework, thus facilitating environment and team specification and deployment. A survey answered by practitioners and researchers shows that the satisfaction with SDL+TDL is elevated (the overall evaluation of SDL+TDL achieved a score of 4 out of 5, with 81%/78.6% of the answers 4); in addition, the usability of the interface was evaluated, achieving a score of 86.7 in the System Usability Scale survey. These results imply that SDL+TDL is flexible enough to represent scenarios and teams, through a user-friendly interface.

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