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Publications

Publications by Pedro Jorge

2017

Towards a Uniform Metrological Assessment of Grating-Based Optical Fiber Sensors: From Refractometers to Biosensors

Authors
Chiavaioli, F; Gouveia, CAJ; Jorge, PAS; Baldini, F;

Publication
BIOSENSORS-BASEL

Abstract
A metrological assessment of grating-based optical fiber sensors is proposed with the aim of providing an objective evaluation of the performance of this sensor category. Attention was focused on the most common parameters, used to describe the performance of both optical refractometers and biosensors, which encompassed sensitivity, with a distinction between volume or bulk sensitivity and surface sensitivity, resolution, response time, limit of detection, specificity (or selectivity), reusability (or regenerability) and some other parameters of generic interest, such as measurement uncertainty, accuracy, precision, stability, drift, repeatability and reproducibility. Clearly, the concepts discussed here can also be applied to any resonance-based sensor, thus providing the basis for an easier and direct performance comparison of a great number of sensors published in the literature up to now. In addition, common mistakes present in the literature made for the evaluation of sensor performance are highlighted, and lastly a uniform performance assessment is discussed and provided. Finally, some design strategies will be proposed to develop a grating-based optical fiber sensing scheme with improved performance.

2017

Optical Fiber Sensor for Early Warning of Corrosion of Metal Structures

Authors
Coelho, L; Santos, JL; Jorge, PAS; de Almeida, JMMM;

Publication
OCEANS 2017 - ABERDEEN

Abstract
Long period fiber gratings (LPFGs) were over coated with iron (Fe) and subjected to oxidation in air and in solutions of water containing different sodium chloride (NaCl) concentrations. The formation of iron oxides and hydroxides was monitored in real time by following the features of the gratings attenuation band. Preliminary results show that Fe coated LPFGs can be used as sensors for early warning of corrosion in offshore and in coastal projects where metal structures made of iron alloys are in contact with sea or brackish water.

2016

Label-free optical biosensor for direct complex DNA detection using Vitis vinifera L.

Authors
Moreira, L; Goncalves, HMR; Pereira, L; Castro, C; Jorge, P; Gouveia, C; Fernandes, JR; Martins Lopes, P;

Publication
SENSORS AND ACTUATORS B-CHEMICAL

Abstract
The ability to detect and quantify small amounts of DNA in biological complex samples is a hot research area. Up until recently most of the work performed in this area used label-dependent protocols that increases its complexity and overall costs. The aim the work was to develop a label-free technology suitable for DNA detection and quantification using real complex DNA samples. The applicability of this system was tested using synthetic ssDNA targets that guaranteed the systems specificity, in the sense that only complementary sequences hybridized with the probe. When using real samples extracted from Vitis vinifera L. the system was able to successfully detect and quantify the DNA present without any of the time consuming and costly amplification steps. The detection and quantification limits of the proposed system were 60 +/- 20 nM and 201 +/- 20 nM, respectively for Target 1 concentrations between 31 and 350 nM. This method can easily be applied to other species and purposes, allowing the direct detection of DNA in a label-free environment with high accuracy and specificity.

2017

Fabrication of Fresnel plates on optical fibres by FIB milling for optical trapping, manipulation and detection of single cells

Authors
Rodrigues Ribeiro, RSR; Dahal, P; Guerreiro, A; Jorge, PAS; Viegas, J;

Publication
SCIENTIFIC REPORTS

Abstract
The development of economical optical devices with a reduced footprint foreseeing manipulation, sorting and detection of single cells and other micro particles have been encouraged by cellular biology requirements. Nonetheless, researchers are still ambitious for advances in this field. This paper presents Fresnel zone and phase plates fabricated on mode expanded optical fibres for optical trapping. The diffractive structures were fabricated using focused ion beam milling. The zone plates presented in this work have focal distance of similar to 5 mu m, while the focal distance of the phase plates is similar to 10 mu m. The phase plates are implemented in an optical trapping configuration, and 2D manipulation and detection of 8 mu m PMMA beads and yeast cells is reported. This enables new applications for optical trapping setups based on diffractive optical elements on optical fibre tips, where feedback systems can be integrated to automatically detect, manipulate and sort cells.

2018

Optical fiber tips for biological applications: From light confinement, biosensing to bioparticles manipulation

Authors
Paiva, JS; Jorge, PAS; Rosa, CC; Cunha, JPS;

Publication
BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Abstract
Background: The tip of an optical fiber has been considered an attractive platform in Biology. The simple cleaved end of an optical fiber can be machined, patterned and/or functionalized, acquiring unique properties enabling the exploitation of novel optical phenomena. Prompted by the constant need to measure and manipulate nanoparticles, the invention of the Scanning Near-field Optical Microscopy (SNOM) triggered the optimization and development of novel fiber tip microfabrication methods. In fact, the fiber tip was soon considered a key element in SNOM by confining light to sufficiently small extensions, challenging the diffraction limit. As result and in consequence of the newly proposed "Lab On Tip" concept, several geometries of fiber tips were applied in three main fields: imaging (in Microscopy/Spectroscopy), biosensors and micromanipulation (Optical Fiber Tweezers, OFTs). These are able to exert forces on microparticles, trap and manipulate them for relevant applications, as biomolecules mechanical study or protein aggregates unfolding. Scope of review: This review presents an overview of the main achievements, most impactful studies and limitations of fiber tip-based configurations within the above three fields, along the past 10 years. Major conclusions: OFTs could be in future a valuable tool for studying several cellular phenomena such as neurodegeneration caused by abnormal protein fibrils or manipulating organelles within cells. This could contribute to understand the mechanisms of some diseases or biophenomena, as the axonal growth in neurons.

2018

The last frontier: Coupling technological developments with scientific challenges to improve hazard assessment of deep-sea mining

Authors
Santos, MM; Jorge, PAS; Coimbra, J; Vale, C; Caetano, M; Bastos, L; Iglesias, I; Guimaraes, L; Reis Henriques, MA; Teles, LO; Vieira, MN; Raimundo, J; Pinheiro, M; Nogueira, V; Pereira, R; Neuparth, T; Ribeiro, MC; Silva, E; Castro, LFC;

Publication
SCIENCE OF THE TOTAL ENVIRONMENT

Abstract
The growing economic interest in the exploitation of mineral resources on deep-ocean beds, including those in the vicinity of sensitive-rich habitats such as hydrothermal vents, raise amounting concern about the damage that such actions might originate to these poorly-know ecosystems, which represent millions of years of evolution and adaptations to extreme environmental conditions. It has been suggested that mining may cause a major impact on vent ecosystems and other deep-sea areas. Yet, the scale and the nature of such impacts are unknown at present. Hence, building upon currently available scientific information it is crucial to develop new cost-effective technologies embedded into rigorous operating frameworks. The forward-thinking provided here will assist in the development of new technologies and tools to address the major challenges associated with deep sea-mining; technologies for in situ and ex situ observation and data acquisition, biogeochemical processes, hazard assessment of deep-sea mining to marine organisms and development of modeling tools in support of risk assessment scenarios. These technological developments are vital to validate a responsible and sustainable exploitation of the deep-sea mineral resources, based on the precautionary principle.

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