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Publications

Publications by Miguel Coimbra

2006

MPEG-7 visual descriptors - Contributions for automated feature extraction in capsule endoscopy

Authors
Coimbra, MT; Cunha, JPS;

Publication
IEEE TRANSACTIONS ON CIRCUITS AND SYSTEMS FOR VIDEO TECHNOLOGY

Abstract
Recent advances in miniaturization led to the development of what is now called the endoscopic capsule. This small device is swallowed by a patient ana films the whole gastrointestinal tract, allowing the detection of abnormalities. Currently, a doctor typically needs up to two hours to analyze a full exam, so automation is desirable. This paper presents a methodology for measuring the potential of selected visual MPEG-7 descriptors for the task of specific medical event detection such as blood, ulcers. Experiments show that the best results are obtained by the Scalable Color and Homogenous Texture descriptors, especially if only relevant coefficients are used.

2012

Invariant Gabor Texture Descriptors for Classification of Gastroenterology Images

Authors
Riaz, F; Silva, FB; Ribeiro, MD; Coimbra, MT;

Publication
IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING

Abstract
Automatic classification of lesions for gastroenterology imaging scenarios poses novel challenges to computer-assisted decision systems, which are mostly attributed to the dynamics of the image acquisition conditions. Such challenges demand that automatic systems are able to give robust characterizations of tissues irrespective of camera rotation, zoom, and illumination gradients when viewing the inner surface of the gastrointestinal tract. In this paper, we study the invariance properties of Gabor filters and propose a novel descriptor, the autocorrelation Gabor features (AGF). We show that our proposed AGF is invariant to scale, rotation, and illumination changes in the images. We integrate these new features in a texton framework (Texton-AGF) to classify images from two complementary gastroenterology imaging scenarios (chromoendoscopy and narrow-band imaging) broadly into three different groups: normal, precancerous, and cancerous. Results show that they compare favorably to using state-of-the-art texture descriptors for both imaging modalities.

2011

GABOR TEXTONS FOR CLASSIFICATION OF GASTROENTEROLOGY IMAGES

Authors
Riaz, F; Areia, M; Silva, FB; Dinis Ribeiro, M; Pimentel Nunes, PP; Coimbra, M;

Publication
2011 8TH IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: FROM NANO TO MACRO

Abstract
Automatic classification of cancer lesions for gastroenterology imaging scenarios poses novel challenges to computer assisted decision systems, owing to their distinct visual characteristics such as reduced color spaces or natural organic textures. In this paper, we explore the prospects of using Gabor filters in a texton framework for the classification of images from two distinct imaging modalities (chromoendoscopy and narrow-band imaging) into three different groups: normal, precancerous and cancerous. Results show that they produce consistent results for both imaging modalities, hinting on their possible generic use for the classification of in-body images.

2009

IDENTIFYING CANCER REGIONS IN VITAL-STAINED MAGNIFICATION ENDOSCOPY IMAGES USING ADAPTED COLOR HISTOGRAMS

Authors
Sousa, A; Dinis Ribeiro, M; Areia, M; Coimbra, M;

Publication
2009 16TH IEEE INTERNATIONAL CONFERENCE ON IMAGE PROCESSING, VOLS 1-6

Abstract
In-body imaging technologies such as vital-stained magnification endoscopy pose novel image processing challenges to computer-assisted decision systems given their unique visual characteristics such as reduced color spaces and natural textures. In this paper we will show the potential of using adapted color features combined with local binary patterns, a texture descriptor that has exhibited good adaptation to natural images, for classifying gastric regions into three groups: normal, pre-cancer and cancer lesions. Results exhibit 91% accuracy, confirming that specific research for in-body imaging could be the key for future computer assisted decision systems for medicine.

2011

SEPARATING SOURCES FROM SEQUENTIALLY ACQUIRED MIXTURES OF HEART SIGNALS

Authors
Hedayioglu, FL; Jafari, MG; Mattos, SS; Plumbley, MD; Coimbra, MT;

Publication
2011 IEEE INTERNATIONAL CONFERENCE ON ACOUSTICS, SPEECH, AND SIGNAL PROCESSING

Abstract
In this paper, we consider the problem of separating a set of independent components when only one movable sensor is available to record the mixtures. We propose to exploit the quasi-periodicity of the heart signals to transform the signal from this one moving sensor, into a set of measurements, as if from a virtual array of sensors. We then use ICA to perform source separation. We show that this technique can be applied to heart sounds and to electrocardiograms.

2010

Investigation of human identification using two-lead Electrocardiogram (ECG) signals

Authors
Ye, C; Coimbra, MT; Kumar, BVKV;

Publication
IEEE 4th International Conference on Biometrics: Theory, Applications and Systems, BTAS 2010

Abstract
In this paper, we investigate the applicability of Electrocardiogram (ECG) signals for human identification. Wavelet Transform (WT) and Independent Component Analysis (ICA) methods are applied to extract morphological features that appear to offer excellent discrimination among subjects. The proposed method is aimed at the two-lead ECG configuration that is routinely used in long-term continuous monitoring of heart activity. The information from the two ECG leads is fused to achieve improved subject identification. The proposed method was tested on three public ECG databases, namely, MIT-BIH Arrhythmias Database [1], MIT-BIH Normal Sinus Rhythm Database [2] and Long-Term ST Database [3], in order to evaluate the proposed subject identification method on normal ECG signals as well as ECG signals with arrhythmias. Excellent rank-1 recognition rates (as high as 99.6%) were achieved based on single heartbeats. The proposed method exhibits good identification accuracies not just with the normal ECG signals, but also in the presence of various arrhythmias. This work adds to the growing evidence that ECG signals can be useful for human identification. © 2010 IEEE.

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