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Publications

Publications by Aurélio Campilho

2012

Image Analysis and Recognition

Authors
Campilho, A; Kamel, M;

Publication
Lecture Notes in Computer Science

Abstract

2012

Automatic Localization of the Optic Disc in Retinal Images Based on the Entropy of Vascular Directions

Authors
Mendonca, AM; Cardoso, F; Sousa, AV; Campilho, A;

Publication
IMAGE ANALYSIS AND RECOGNITION, PT II

Abstract
This paper proposes an automatic method for estimating the location of the optic disc in color images of the retina. The proposed methodology is founded in a new concept, the entropy of vascular directions, which proved to be a reliable measure for assessing the convergence of vessels around an image point. To improve the robustness of the method, the search for the maximum value of entropy is restricted to image areas with high intensity. This new method was evaluated in two publicly available databases, containing both normal and pathological images, and was able to obtain a valid location for the optic disc in 115 out of the 121 images of the two datasets.

2010

Optical flow based Arabidopsis thaliana root meristem cell division detection

Authors
Quelhas, P; Mendonca, AM; Campilho, A;

Publication
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Abstract
The study of cell division and growth is a fundamental aspect of plant biology research. In this research the Arabidopsis thaliana plant is the most widely studied model plant and research is based on in vivo observation of plant cell development, by time-lapse confocal microscopy. The research herein described is based on a large amount of image data, which must be analyzed to determine meaningful transformation of the cells in the plants. Most approaches for cell division detection are based on the morphological analysis of the cells' segmentation. However, cells are difficult to segment due to bad image quality in the in vivo images. We describe an approach to automatically search for cell division in the Arabidopsis thaliana root meristem using image registration and optical flow. This approach is based on the difference of speeds of the cell division and growth processes (cell division being a much faster process). With this approach, we can achieve a detection accuracy of 96.4%. © 2010 Springer-Verlag.

2008

A hybrid approach for Arabidopsis root cell image segmentation

Authors
Marcuzzo, M; Quelhas, P; Campilho, A; Mendonca, AM; Campilho, A;

Publication
IMAGE ANALYSIS AND RECOGNITION, PROCEEDINGS

Abstract
In vivo observation and tracking of the Arabidopsis thaliana root meristem, by time-lapse confocal microscopy, is important to understand mechanisms like cell division and elongation. The research herein described is based on a large amount of image data, which must be analyzed to determine the location and state of cells. The automation of the process of cell detection/marking is an important step to provide research tools for the biologists in order to ease the search for special events, such as cell division. This paper discusses a hybrid approach for automatic cell segmentation, which selects the best cell candidates from a starting watershed-based image segmentation and improves the result by merging adjacent regions. The selection of individual cells is obtained using a Support Vector Machine (SVM) classifier, based on the shape and edge strength of the cells' contour. The merging criterion is based on edge strength along the line that connects adjacent cells' centroids. The resulting segmentation is largely pruned of badly segmented and over-segmented cells, thus facilitating the study of cell division.

2009

Cell division detection on the arabidopsis thaliana root

Authors
Marcuzzo, M; Guichard, T; Quelhas, P; Mendonca, AM; Campilho, A;

Publication
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Abstract
The study of individual plant cells and their growth structure is an important focus of research in plant genetics. To obtain development information at cellular level, researchers need to perform in vivo imaging of the specimen under study, through time-lapse confocal microscopy. Within this research field it is important to understand mechanisms like cell division and elongation of developing cells. We describe a tool to automatically search for cell division in the Arabidopsis thaliana using information of nuclei shape. The nuclei detection is based on a convergence index filter. Cell division detection is performed by an automatic classifier, trained through cross-validation. The results are further improved by a stability criterion based on the Mahalanobis distance of the shape of the nuclei through time. With this approach, we can achieve a correct detection rate of 94.7%. © 2009 Springer Berlin Heidelberg.

2001

A neural network approach for the automatic detection of microaneurysms in retinal angiograms

Authors
Kamel, M; Belkassim, S; Mendonca, AM; Campilho, A;

Publication
IJCNN'01: INTERNATIONAL JOINT CONFERENCE ON NEURAL NETWORKS, VOLS 1-4, PROCEEDINGS

Abstract
In this paper a neural network structure is used to develop a system capable of detecting microaneurysms locations in retinal angiograms. The LVQ (learning vector quantization) neural network is used to classify the input patterns into their desired classes using competitive layers. The neurons in the competitive layers compete among each other to produce subclasses. These subclasses are then combined to produce the desired output classes. The input vector of the neural network is derived from a grid of smaller image windows. The presence of microaneurysms in these windows is detected according to a novel multi-stage training procedure that has proved to be very effective.

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