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Publications

Publications by Mário Cunha

2021

Comparing Hydric Erosion Soil Loss Models in Rainy Mountainous and Dry Flat Regions in Portugal

Authors
Duarte, L; Cunha, M; Teodoro, AC;

Publication
LAND

Abstract
Soil erosion is a severe and complex issue in the agriculture area. The main objective of this study was to assess the soil loss in two regions, testing different methodologies and combining different factors of the Revised Universal Soil Loss Equation (RUSLE) based on Geographical Information Systems (GIS). To provide the methodologies to other users, a GIS open-source application was developed. The RUSLE equation was applied with the variation of some factors that compose it, namely the slope length and slope steepness (LS) factor and practices factor (P), but also with the use of different sources of information. Eight different erosion models (M1 to M8) were applied to the two regions with different ecological conditions: Montalegre (rainy-mountainous) and Alentejo (dry-flat), both in Portugal, to compare them and to evaluate the soil loss for 3 potential erosion levels: 0-25, 25-50 and >50 ton/ha center dot year. Regarding the methodologies, in both regions the behavior is similar, indicating that the M5 and M6 methodologies can be more conservative than the others (M1, M2, M3, M4 and M8), which present very consistent values in all classes of soil loss and for both regions. All methodologies were implemented in a GIS application, which is free and available under QGIS software.

2021

Evaluating the Single-Shot MultiBox Detector and YOLO Deep Learning Models for the Detection of Tomatoes in a Greenhouse

Authors
Magalhaes, SA; Castro, L; Moreira, G; dos Santos, FN; Cunha, M; Dias, J; Moreira, AP;

Publication
SENSORS

Abstract
The development of robotic solutions for agriculture requires advanced perception capabilities that can work reliably in any crop stage. For example, to automatise the tomato harvesting process in greenhouses, the visual perception system needs to detect the tomato in any life cycle stage (flower to the ripe tomato). The state-of-the-art for visual tomato detection focuses mainly on ripe tomato, which has a distinctive colour from the background. This paper contributes with an annotated visual dataset of green and reddish tomatoes. This kind of dataset is uncommon and not available for research purposes. This will enable further developments in edge artificial intelligence for in situ and in real-time visual tomato detection required for the development of harvesting robots. Considering this dataset, five deep learning models were selected, trained and benchmarked to detect green and reddish tomatoes grown in greenhouses. Considering our robotic platform specifications, only the Single-Shot MultiBox Detector (SSD) and YOLO architectures were considered. The results proved that the system can detect green and reddish tomatoes, even those occluded by leaves. SSD MobileNet v2 had the best performance when compared against SSD Inception v2, SSD ResNet 50, SSD ResNet 101 and YOLOv4 Tiny, reaching an F1-score of 66.15%, an mAP of 51.46% and an inference time of 16.44 ms with the NVIDIA Turing Architecture platform, an NVIDIA Tesla T4, with 12 GB. YOLOv4 Tiny also had impressive results, mainly concerning inferring times of about 5 ms.

2021

Integrating Spectral and Textural Information for Monitoring the Growth of Pear Trees Using Optical Images from the UAV Platform

Authors
Guo, YH; Chen, SZ; Wu, ZF; Wang, SX; Bryant, CR; Senthilnath, J; Cunha, M; Fu, YSH;

Publication
REMOTE SENSING

Abstract
With the recent developments of unmanned aerial vehicle (UAV) remote sensing, it is possible to monitor the growth condition of trees with the high temporal and spatial resolutions of data. In this study, the daily high-throughput RGB images of pear trees were captured from a UAV platform. A new index was generated by integrating the spectral and textural information using the improved adaptive feature weighting method (IAFWM). The inter-relationships of the air climatic variables and the soil's physical properties (temperature, humidity and conductivity) were firstly assessed using principal component analysis (PCA). The climatic variables were selected to independently build a linear regression model with the new index when the cumulative variance explained reached 99.53%. The coefficient of determination (R-2) of humidity (R-2 = 0.120, p = 0.205) using linear regression analysis was the dominating influencing factor for the growth of the pear trees, among the air climatic variables tested. The humidity (%) in 40 cm depth of soil (R-2 = 0.642, p < 0.001) using a linear regression coefficient was the largest among climatic variables in the soil. The impact of climatic variables on the soil was commonly greater than those in the air, and the R-2 grew larger with the increasing depth of soil. The effects of the fluctuation of the soil-climatic variables on the pear trees' growth could be detected using the sliding window method (SWM), and the maximum absolute value of coefficients with the corresponding day of year (DOY) of air temperature, soil temperature, soil humidity, and soil conductivity were confirmed as 221, 227, 228, and 226 (DOY), respectively. Thus, the impact of the fluctuation of climatic variables on the growth of pear trees can last 14, 8, 7, and 9 days, respectively. Therefore, it is highly recommended that the adoption of the integrated new index to explore the long-time impact of climate on pears growth be undertaken.

2021

Tomato Detection Using Deep Learning for Robotics Application

Authors
Padilha, TC; Moreira, G; Magalhaes, SA; dos Santos, FN; Cunha, M; Oliveira, M;

Publication
PROGRESS IN ARTIFICIAL INTELLIGENCE (EPIA 2021)

Abstract
The importance of agriculture and the production of fruits and vegetables has stood out mainly over the past few years, especially for the benefits for our health. In 2021, in the international year of fruit and vegetables, it is important to encourage innovation and evolution in this area, with the needs surrounding the different processes of the different cultures. This paper compares the performance between two datasets for robotics fruit harvesting using four deep learning object detection models: YOLOv4, SSD ResNet 50, SSD Inception v2, SSD MobileNet v2. This work aims to benchmark the Open Images Dataset v6 (OIDv6) against an acquired dataset inside a tomatoes greenhouse for tomato detection in agricultural environments, using a test dataset with acquired non augmented images. The results highlight the benefit of using self-acquired datasets for the detection of tomatoes because the state-of-the-art datasets, as OIDv6, lack some relevant characteristics of the fruits in the agricultural environment, as the shape and the color. Detections in greenhouses environments differ greatly from the data inside the OIDv6, which has fewer annotations per image and the tomato is generally riped (reddish). Standing out in the use of our tomato dataset, YOLOv4 stood out with a precision of 91%. The tomato dataset was augmented and is publicly available (See https://rdm.inesctec.pt/ and https://rdm.inesctec.pt/dataset/ii-2021-001).

2021

PixelCropRobot, a cartesian multitask platform for microfarms automation

Authors
Terra F.; Rodrigues L.; Magalhaes S.; Santos F.; Moura P.; Cunha M.;

Publication
2021 International Symposium of Asian Control Association on Intelligent Robotics and Industrial Automation, IRIA 2021

Abstract
The world society needs to produce more food with the highest quality standards to feed the world population with the same level of nutrition. Microfarms and local food production enable growing vegetables near the population and reducing the operational logistics costs related to post-harvest food handling. However, it isn't economical viable neither efficient to have one person devoted to these microfarms task. To overcome this issue, we propose an open-source robotic solution capable of performing multitasks in small polyculture farms. This robot is equipped with optical sensors, manipulators and other mechatronic technology to monitor and process both biotic and abiotic agronomic data. This information supports the consequent activation of manipulators that perform several agricultural tasks: crop and weed detection, sowing and watering. The development of the robot meets low-cost requirements so that it can be a putative commercial solution. This solution is designed to be relevant as a test platform to support the assembly of new sensors and further develop new cognitive solutions, to raise awareness on topics related to Precision Agriculture. We are looking for a rational use of resources and several other aspects of an evolved, economically efficient and ecologically sustainable agriculture.

2022

Monitoring Plant Diversity to Support Agri-Environmental Schemes: Evaluating Statistical Models Informed by Satellite and Local Factors in Southern European Mountain Pastoral Systems

Authors
Monteiro, AT; Alves, P; Carvalho Santos, C; Lucas, R; Cunha, M; da Costa, EM; Fava, F;

Publication
DIVERSITY-BASEL

Abstract
The spatial monitoring of plant diversity in the endangered species-rich grasslands of European mountain pastoral systems is an important step for fairer and more efficient Agri-Environmental policy schemes supporting conservation. This study assessed the underlying support for a spatially explicit monitoring of plant species richness at parcel level (policy making scale) in Southern European mountain grasslands, with statistical models informed by Sentinel-2 satellite and environmental factors. Twenty-four grassland parcels were surveyed for species richness in the Peneda-Geres National Park, northern Portugal. Using a multi-model inference approach, three competing hypotheses guided by the species-scaling theoretical framework were established: species-area (P1), species-energy (P2) and species-spectral heterogeneity (P3), each representing a candidate spatial pathway to predict species richness. To evaluate the statistical support of each spatial pathway, generalized linear models were fitted and model selection based on Akaike information criterion (AIC) was conducted. Later, the performance of the most supported spatial pathway(s) was assessed using a leave-one-out cross validation. A model guided by the species-energy hypothesis (P2) was the most parsimonious spatial pathway to monitor plant species richness in mountain grassland parcels (P2, AICc = 137.6, increment AIC = 0.0, wi = 0.97). Species-area and species-spectral heterogeneity pathways (P1 and P3) were less statistically supported (Delta AICc values in the range 5.7-10.0). The underlying support of the species-energy spatial pathway was based on Sentinel-2 satellite data, namely on the near-infrared (NIR) green ratio in the spring season (NIR/Green(spring)) and on its ratio of change between spring and summer (NIR/Green(change)). Both predictor variables related negatively to species richness. Grassland parcels with lower values of near-infrared (NIR) green ratio and lower seasonal amplitude presented higher species richness records. The leave-one-out cross validation indicated a moderate performance of the species-energy spatial pathway in predicting species richness in the grassland parcels covered by the dataset (R-2 = 0.44, RMSE = 4.3 species, MAE = 3.5 species). Overall, a species-energy framework based on Sentinel 2 data resulted in a promising spatial pathway for the monitoring of species richness in mountain grassland parcels and for informing decision making on Agri-Environmental policy schemes. The near-infrared (NIR) green ratio and its change in time seems a relevant variable to deliver predictions for plant species richness and further research should be conducted on that.

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