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Publications

Publications by Tânia Pereira

2018

Supervised learning methods for pathological arterial pulse wave differentiation: A SVM and neural networks approach

Authors
Paiva, JS; Cardoso, J; Pereira, T;

Publication
INTERNATIONAL JOURNAL OF MEDICAL INFORMATICS

Abstract
Objective: The main goal of this study was to develop an automatic method based on supervised learning methods, able to distinguish healthy from pathologic arterial pulse wave (APW), and those two from noisy waveforms (non-relevant segments of the signal), from the data acquired during a clinical examination with a novel optical system. Materials and methods: The APW dataset analysed was composed by signals acquired in a clinical environment from a total of 213 subjects, including healthy volunteers and non-healthy patients. The signals were parameterised by means of 39 pulse features: morphologic, time domain statistics, cross-correlation features, wavelet features. Multiclass Support Vector Machine Recursive Feature Elimination (SVM RFE) method was used to select the most relevant features. A comparative study was performed in order to evaluate the performance of the two classifiers: Support Vector Machine (SVM) and Artificial Neural Network (ANN). Results and discussion: SVM achieved a statistically significant better performance for this problem with an average accuracy of 0.9917 +/- 0.0024 and a F-Measure of 0.9925 +/- 0.0019, in comparison with ANN, which reached the values of 0.9847 +/- 0.0032 and 0.9852 +/- 0.0031 for Accuracy and F-Measure, respectively. A significant difference was observed between the performances obtained with SVM classifier using a different number of features from the original set available. Conclusion: The comparison between SVM and NN allowed reassert the higher performance of SVM. The results obtained in this study showed the potential of the proposed method to differentiate those three important signal outcomes (healthy, pathologic and noise) and to reduce bias associated with clinical diagnosis of cardiovascular disease using APW.

2013

Characterization of Optical System for Hemodynamic Multi-Parameter Assessment

Authors
Pereira, T; Santos, I; Oliveira, T; Vaz, P; Correia, T; Pereira, T; Santos, H; Pereira, H; Almeida, V; Cardoso, J; Correia, C;

Publication
Cardiovascular Engineering and Technology

Abstract
Cardiovascular diseases are a growing epidemiological burden in today's society. A great deal of effort has been made to find solutions able to perform non-invasive monitoring and early diagnosis of such pathologies. The pulse wave velocity and certain waveform characteristics constitute some of the most important cardiovascular risk indicators. Optical sensors are an attractive instrumental solution in this kind of time assessment applications due to their truly non-contact operation capability and better resolution than commercial devices. This study consisted on the experimental validation and a clinical feasibility for a non-invasive and multi-parametric optical system for evaluation of the cardiovascular condition. Two prototypes, based on two different types of photodetectors (planar and avalanche photodiode) were tested in a small group of volunteers, and the main hemodynamic parameters were measured, such as pulse wave velocity and indexes of pulse waveform analysis: the Augmentation Index, Subendocardial Viability Ratio and Ejection Time Index. The probes under study proved to be able to measure the pulse pressure wave in a reliable manner at the carotid site, and demonstrated the consistency of the parameters determined using dedicated algorithms. This study represents a preliminary evaluation of an optical system devoted to the clinical evaluation environment. Further development to take this system to a higher level of clinical significance, by incorporating it in a multicenter study, is currently underway. © 2013 Biomedical Engineering Society.

2014

Clinical Test for Validation of a New Optical Probe for Hemodynamic Parameters Assessment

Authors
Pereira, T; Santos, I; Oliveira, T; Vaz, P; Almeida, V; Pereira, HC; Correia, C; Cardoso, J; Pereira, TS; Santos, H; Pereira, HC;

Publication
BIOMEDICAL ENGINEERING SYSTEMS AND TECHNOLOGIES (BIOSTEC 2013)

Abstract
The assessment of the cardiovascular system condition based on multiple parameters allows a more precise and accurate diagnosis of the heart and arterial tree condition. For this reason, the interest in non-invasive devices has presently increased in importance. In this work, an optical probe was tested in order to validate this technology for measuring multiple parameters such as Pulse Wave Velocity (PWV) or Augmentation Index (AIx), amongst others. The PWV measured by the optical probe was previously compared with the values obtained with the gold-standard system. Another analysis was performed in 131 young subjects to establish carotid PWV reference values as well as other hemodynamic parameters and to find correlations between these and the population characteristics. The results allowed us to conclude that this new technique is a reliable method to determine these parameters. The range of the obtained values for local PWV are in agreement with the values obtained by other studies, and significant correlations with age and smoking status were found. The AIx varied between -6.15 % and 11.46 % and exhibit a negative correlation with heart rate, and dP/dt(max) shows a significant decrease with age.

2013

Data Mining based Methodologies for Cardiac Risk Patterns Identification

Authors
Almeidal, VG; Borba, J; Pereira, T; Pereira, HC; Cardoso, J; Correia, C;

Publication
BIOINFORMATICS 2013: PROCEEDINGS OF THE INTERNATIONAL CONFERENCE ON BIOINFORMATICS MODELS, METHODS AND ALGORITHMS

Abstract
Cardiovascular diseases (CVDs) are the leading cause of death in the world. The pulse wave analysis provides a new insight in the analysis of these pathologies, while data mining techniques can contribute for an efficient diagnostic method. Amongst the various available techniques, artificial neural networks (ANNs) are well established in biomedical applications and have numerous successful classification applications. Also, clustering procedures have proven to be very useful in assessing different risk groups in terms of cardiovascular function in healthy populations. In this paper, a robust data mining approach was performed for cardiac risk patterns identification. Eight classifiers were tested: C4.5, Random Forest, RIPPER, Naive Bayes, Bayesian Network, Multy-layer perceptron (MLP) (1 and 2-hidden layers) and radial basis function (RBF). As for clustering procedures, k-means clustering (using Euclidean distance) and expectation-maximization (EM) were the chosen algorithms. Two datasets were used as case studies to perform classification and clustering analysis. The accuracy values are good with intervals between 88.05% and 97.15%. The clustering techniques were essential in the analysis of a dataset where little information was available, allowing the identification of different clusters that represent different risk group in terms cardiovascular function. The three cluster analysis has allowed the characterization of distinctive features for each of the clusters. Reflected wave time (T_RP) and systolic wave time (T_SP) were the selected features for clusters visualization. Data mining methodologies have proven their usefulness in screening studies due to its descriptive and predictive power.

2014

Cardiovascular risk analysis by means of pulse morphology and clustering methodologies

Authors
Almeida, VG; Borba, J; Pereira, HC; Pereira, T; Correia, C; Pego, M; Cardoso, J;

Publication
COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

Abstract
The purpose of this study was the development of a clustering methodology to deal with arterial pressure waveform (APW) parameters to be used in the cardiovascular risk assessment. One hundred sixteen subjects were monitored and divided into two groups. The first one (23 hypertensive subjects) was analyzed using APW and biochemical parameters, while the remaining 93 healthy subjects were only evaluated through APW parameters. The expectation maximization (EM) and k-means algorithms were used in the cluster analysis, and the risk scores (the Framingham Risk Score (FRS), the Systematic COronary Risk Evaluation (SCORE) project, the Assessing cardiovascular risk using Scottish Intercollegiate Guidelines Network (ASSIGN) and the PROspective Cardiovascular munster (PROCAM)), commonly used in clinical practice were selected to the cluster risk validation. The result from the clustering risk analysis showed a very significant correlation with ASSIGN (r = 0.582, p < 0.01) and a significant correlation with FRS (r = 0.458, p < 0.05). The results from the comparison of both groups also allowed to identify the cluster with higher cardiovascular risk in the healthy group. These results give new insights to explore this methodology in future scoring trials.

2017

Heart rate variability metrics for fine-grained stress level assessment

Authors
Pereira, T; Almeida, PR; Cunha, JPS; Aguiar, A;

Publication
COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

Abstract
Background and Objectives: In spite of the existence of a multitude of techniques that allow the estimation of stress from physiological indexes, its fine-grained assessment is still a challenge for biomedical engineering. The short-term assessment of stress condition overcomes the limits to stress characterization with long blocks of time and allows to evaluate the behaviour change in real-world settings and also the stress level dynamics. The aim of the present study was to evaluate time and frequency domain and nonlinear heart rate variability (HRV) metrics for stress level assessment using a short-time window. Methods: The electrocardiogram (ECG) signal from 14 volunteers was monitored using the Vital Jacketml while they performed the Trier Social Stress Test (TSST) which is a standardized stress-inducing protocol. Window lengths from 220 s to 50 s for HRV analysis were tested in order to evaluate which metrics could be used to monitor stress levels in an almost continuous way. Results: A sub-set of HRV metrics (AVNN, rMSSD, SDNN and pNN20) showed consistent differences between stress and non-stress phases, and showed to be reliable parameters for the assessment of stress levels in short-term analysis. Conclusions: The AVNN metric, using 50 s of window length analysis, showed that it is the most reliable metric to recognize stress level across the four phases of TSST and allows a fine-grained analysis of stress effect as an index of psychological stress and provides an insight into the reaction of the autonomic nervous system to stress.

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