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Publications

Publications by Pedro David Carneiro

2023

Annotating for Artificial Intelligence Applications in Digital Pathology: A Practical Guide for Pathologists and Researchers

Authors
Montezuma, D; Oliveira, SP; Neto, PC; Oliveira, D; Monteiro, A; Cardoso, JS; Macedo-Pinto, I;

Publication
MODERN PATHOLOGY

Abstract
Training machine learning models for artificial intelligence (AI) applications in pathology often requires extensive annotation by human experts, but there is little guidance on the subject. In this work, we aimed to describe our experience and provide a simple, useful, and practical guide addressing annotation strategies for AI development in computational pathology. Annotation methodology will vary significantly depending on the specific study's objectives, but common difficulties will be present across different settings. We summarize key aspects and issue guiding principles regarding team interaction, ground-truth quality assessment, different annotation types, and available software and hardware options and address common difficulties while annotating. This guide was specifically designed for pathology annotation, intending to help pathologists, other researchers, and AI developers with this process.(c) 2022 THE AUTHORS. Published by Elsevier Inc. on behalf of the United States & Canadian Academy of Pathology. This is an open access article under the CC BY-NC-ND license (http://creativecommons. org/licenses/by-nc-nd/4.0/).

2023

A CAD system for automatic dysplasia grading on H&E cervical whole-slide images

Authors
Oliveira, SP; Montezuma, D; Moreira, A; Oliveira, D; Neto, PC; Monteiro, A; Monteiro, J; Ribeiro, L; Goncalves, S; Pinto, IM; Cardoso, JS;

Publication
SCIENTIFIC REPORTS

Abstract
Cervical cancer is the fourth most common female cancer worldwide and the fourth leading cause of cancer-related death in women. Nonetheless, it is also among the most successfully preventable and treatable types of cancer, provided it is early identified and properly managed. As such, the detection of pre-cancerous lesions is crucial. These lesions are detected in the squamous epithelium of the uterine cervix and are graded as low- or high-grade intraepithelial squamous lesions, known as LSIL and HSIL, respectively. Due to their complex nature, this classification can become very subjective. Therefore, the development of machine learning models, particularly directly on whole-slide images (WSI), can assist pathologists in this task. In this work, we propose a weakly-supervised methodology for grading cervical dysplasia, using different levels of training supervision, in an effort to gather a bigger dataset without the need of having all samples fully annotated. The framework comprises an epithelium segmentation step followed by a dysplasia classifier (non-neoplastic, LSIL, HSIL), making the slide assessment completely automatic, without the need for manual identification of epithelial areas. The proposed classification approach achieved a balanced accuracy of 71.07% and sensitivity of 72.18%, at the slide-level testing on 600 independent samples, which are publicly available upon reasonable request.

2023

Unveiling the Two-Faced Truth: Disentangling Morphed Identities for Face Morphing Detection

Authors
Caldeira, E; Neto, PC; Gonçalves, T; Damer, N; Sequeira, AF; Cardoso, JS;

Publication
31st European Signal Processing Conference, EUSIPCO 2023, Helsinki, Finland, September 4-8, 2023

Abstract
Morphing attacks keep threatening biometric systems, especially face recognition systems. Over time they have become simpler to perform and more realistic, as such, the usage of deep learning systems to detect these attacks has grown. At the same time, there is a constant concern regarding the lack of interpretability of deep learning models. Balancing performance and interpretability has been a difficult task for scientists. However, by leveraging domain information and proving some constraints, we have been able to develop IDistill, an interpretable method with state-of-the-art performance that provides information on both the identity separation on morph samples and their contribution to the final prediction. The domain information is learnt by an autoencoder and distilled to a classifier system in order to teach it to separate identity information. When compared to other methods in the literature it outperforms them in three out of five databases and is competitive in the remaining. © 2023 European Signal Processing Conference, EUSIPCO. All rights reserved.

2021

Deep Learning Based Analysis of Prostate Cancer from MP-MRI

Authors
Neto, PC;

Publication
CoRR

Abstract

2023

A CAD System for Colorectal Cancer from WSI: A Clinically Validated Interpretable ML-based Prototype

Authors
Neto, PC; Montezuma, D; de Oliveira, SP; Oliveira, D; Fraga, J; Monteiro, A; Monteiro, JC; Ribeiro, L; Gonçalves, S; Reinhard, S; Zlobec, I; Pinto, IM; Cardoso, JS;

Publication
CoRR

Abstract

2022

Explainable Biometrics in the Age of Deep Learning

Authors
Neto, PC; Gonçalves, T; Pinto, JR; Silva, W; Sequeira, AF; Ross, A; Cardoso, JS;

Publication
CoRR

Abstract

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