Cookies Policy
The website need some cookies and similar means to function. If you permit us, we will use those means to collect data on your visits for aggregated statistics to improve our service. Find out More
Accept Reject
  • Menu
Publications

Publications by BIO

2021

Characterization of an hollow core PCF for endoscopy applications: A proof concept

Authors
Marques J.; Novais S.; Silva S.; Frazao O.;

Publication
2021 Telecoms Conference, ConfTELE 2021

Abstract
Two distinct optical fibers for endoscope-based configurations are demonstrated and studied in this work. The fibers used for the experiment consist of: a conventional singlemode fiber (SMF 28e) and a hollow core photonic crystal fiber (HC-PCF) based on silica. Two studies that allowed the characterization of these fibers, according to their optical output power and when subjected to curvature, were carried out. The intensity power profile was also analysed in relation to the propagation distance, transversal displacement and incidence angle. After this study it can be concluded that the most suitable solution for the endoscope is the HC-PCF fiber working as a transmission probe. For the proof of concept of the fiber-based endoscope, a cleaved multimode fiber (MMF) tip was used as a reception probe and its reflection efficiency was also analysed.

2021

Spectral Optical Properties of Rabbit Brain Cortex between 200 and 1000 nm

Authors
Gonçalves, TM; Martins, IS; Silva, HF; Tuchin, VV; Oliveira, LM;

Publication
Photochem

Abstract
The knowledge of the optical properties of biological tissues in a wide spectral range is highly important for the development of noninvasive diagnostic or treatment procedures. The absorption coefficient is one of those properties, from which various information about tissue components can be retrieved. Using transmittance and reflectance spectral measurements acquired from ex vivo rabbit brain cortex samples allowed to calculate its optical properties in the ultraviolet to the near infrared spectral range. Melanin and lipofuscin, the two pigments that are related to the aging of tissues and cells were identified in the cortex absorption. By subtracting the absorption of these pigments from the absorption of the brain cortex, it was possible to evaluate the true ratios for the DNA/RNA and hemoglobin bands in the cortex—12.33-fold (at 260 nm), 12.02-fold (at 411 nm) and 4.47-fold (at 555 nm). Since melanin and lipofuscin accumulation increases with the aging of the brain tissues and are related to the degeneration of neurons and their death, further studies should be performed to evaluate the evolution of pigment accumulation in the brain, so that new optical methods can be developed to aid in the diagnosis and monitoring of brain diseases.

2021

Topological Similarity Index and Loss Function for Blood Vessel Segmentation

Authors
Araújo, RJ; Cardoso, JS; Oliveira, HP;

Publication
CoRR

Abstract

2021

Refractive Index Matching Efficiency in Colorectal Mucosa Treated With Glycerol

Authors
Gomes, NM; Tuchin, VV; Oliveira, LM;

Publication
IEEE JOURNAL OF SELECTED TOPICS IN QUANTUM ELECTRONICS

Abstract
In this paper, we describe the study of the kinetics and efficiency of the refractive index matching mechanism created by highly concentrated glycerol solutions in human normal and pathological colorectal mucosa tissues. Considering thewavelength range between 200 and 1000 nm, higher efficiency was obtained for the pathological mucosa, which shows a decreasing efficiency with increasing wavelength. The normal mucosa presents similar values in the deep-ultraviolet and in the near-infrared. Minimal efficiency values of 1% and 1.5% were obtained in the normal and pathological mucosa at 266 nm (combined absorption of DNA/RNA and myoglobin/hemoglobin bands at 260 and 274 nm) and local maxima of 2.9% and 3.8% were obtained in the same tissues at 570 nm. The diffusion time of glycerol was estimated as 417.3 +/- 5.2 s in normal mucosa and 504.9 +/- 3.8 s in pathological mucosa, suggesting that less molecules are necessary in the pathological tissue to produce a higher magnitude RI matching.

2021

Ordinal losses for classification of cervical cancer risk

Authors
Albuquerque, T; Cruz, R; Cardoso, JS;

Publication
PEERJ COMPUTER SCIENCE

Abstract
Cervical cancer is the fourth leading cause of cancer-related deaths in women, especially in low to middle-income countries. Despite the outburst of recent scientific advances, there is no totally effective treatment, especially when diagnosed in an advanced stage. Screening tests, such as cytology or colposcopy, have been responsible for a substantial decrease in cervical cancer deaths. Cervical cancer automatic screening via Pap smear is a highly valuable cell imaging-based detection tool, where cells must be classified as being within one of a multitude of ordinal classes, ranging from abnormal to normal. Current approaches to ordinal inference for neural networks are found to not sufficiently take advantage of the ordinal problem or to be too uncompromising. A non-parametric ordinal loss for neuronal networks is proposed that promotes the output probabilities to follow a unimodal distribution. This is done by imposing a set of different constraints over all pairs of consecutive labels which allows for a more flexible decision boundary relative to approaches from the literature. Our proposed loss is contrasted against other methods from the literature by using a plethora of deep architectures. A first conclusion is the benefit of using non-parametric ordinal losses against parametric losses in cervical cancer risk prediction. Additionally, the proposed loss is found to be the top-performer in several cases. The best performing model scores an accuracy of 75.6% for seven classes and 81.3% for four classes.

2021

Automatic classification of retinal blood vessels based on multilevel thresholding and graph propagation

Authors
Remeseiro, B; Mendonca, AM; Campilho, A;

Publication
VISUAL COMPUTER

Abstract
Several systemic diseases affect the retinal blood vessels, and thus, their assessment allows an accurate clinical diagnosis. This assessment entails the estimation of the arteriolar-to-venular ratio (AVR), a predictive biomarker of cerebral atrophy and cardiovascular events in adults. In this context, different automatic and semiautomatic image-based approaches for artery/vein (A/V) classification and AVR estimation have been proposed in the literature, to the point of having become a hot research topic in the last decades. Most of these approaches use a wide variety of image properties, often redundant and/or irrelevant, requiring a training process that limits their generalization ability when applied to other datasets. This paper presents a new automatic method for A/V classification that just uses the local contrast between blood vessels and their surrounding background, computes a graph that represents the vascular structure, and applies a multilevel thresholding to obtain a preliminary classification. Next, a novel graph propagation approach was developed to obtain the final A/V classification and to compute the AVR. Our approach has been tested on two public datasets (INSPIRE and DRIVE), obtaining high classification accuracy rates, especially in the main vessels, and AVR ratios very similar to those provided by human experts. Therefore, our fully automatic method provides the reliable results without any training step, which makes it suitable for use with different retinal image datasets and as part of any clinical routine.

  • 22
  • 113