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Publications

Publications by BIO

2020

iLoF: An intelligent Lab on Fiber Approach for Human Cancer Single-Cell Type Identification

Authors
Paiva, JS; Jorge, PAS; Ribeiro, RSR; Balmana, M; Campos, D; Mereiter, S; Jin, CS; Karlsson, NG; Sampaio, P; Reis, CA; Cunha, JPS;

Publication
SCIENTIFIC REPORTS

Abstract
With the advent of personalized medicine, there is a movement to develop "smaller" and "smarter" microdevices that are able to distinguish similar cancer subtypes. Tumor cells display major differences when compared to their natural counterparts, due to alterations in fundamental cellular processes such as glycosylation. Glycans are involved in tumor cell biology and they have been considered to be suitable cancer biomarkers. Thus, more selective cancer screening assays can be developed through the detection of specific altered glycans on the surface of circulating cancer cells. Currently, this is only possible through time-consuming assays. In this work, we propose the "intelligent" Lab on Fiber (iLoF) device, that has a high-resolution, and which is a fast and portable method for tumor single-cell type identification and isolation. We apply an Artificial Intelligence approach to the back-scattered signal arising from a trapped cell by a micro-lensed optical fiber. As a proof of concept, we show that iLoF is able to discriminate two human cancer cell models sharing the same genetic background but displaying a different surface glycosylation profile with an accuracy above 90% and a speed rate of 2.3 seconds. We envision the incorporation of the iLoF in an easy-to-operate microchip for cancer identification, which would allow further biological characterization of the captured circulating live cells.

2020

LNDetector: A Flexible Gaze Characterisation Collaborative Platform for Pulmonary Nodule Screening

Authors
Pedrosa, J; Aresta, G; Rebelo, J; Negrao, E; Ramos, I; Cunha, A; Campilho, A;

Publication
XV MEDITERRANEAN CONFERENCE ON MEDICAL AND BIOLOGICAL ENGINEERING AND COMPUTING - MEDICON 2019

Abstract
Lung cancer is the deadliest type of cancer worldwide and late detection is one of the major factors for the low survival rate of patients. Low dose computed tomography has been suggested as a potential early screening tool but manual screening is costly, time-consuming and prone to interobserver variability. This has fueled the development of automatic methods for the detection, segmentation and characterisation of pulmonary nodules but its application to the clinical routine is challenging. In this study, a platform for the development, deployment and testing of pulmonary nodule computer-aided strategies is presented: LNDetector. LNDetector integrates image exploration and nodule annotation tools as well as advanced nodule detection, segmentation and classification methods and gaze characterisation. Different processing modules can easily be implemented or replaced to test their efficiency in clinical environments and the use of gaze analysis allows for the development of collaborative strategies. The potential use of this platform is shown through a combination of visual search, gaze characterisation and automatic nodule detection tools for an efficient and collaborative computer-aided strategy for pulmonary nodule screening.

2020

A Novel 2-D Speckle Tracking Method for High-Frame-Rate Echocardiography

Authors
Orlowska, M; Ramalli, A; Petrescu, A; Cvijic, M; Bezy, S; Santos, P; Pedrosa, J; Voigt, JU; D'Hooge, J;

Publication
IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control

Abstract
Speckle tracking echocardiography (STE) is a clinical tool to noninvasively assess regional myocardial function through the quantification of regional motion and deformation. Even if the time resolution of STE can be improved by high-frame-rate (HFR) imaging, dedicated HFR STE algorithms have to be developed to detect very small interframe motions. Therefore, in this article, we propose a novel 2-D STE method, purposely developed for HFR echocardiography. The 2-D motion estimator consists of a two-step algorithm based on the 1-D cross correlations to separately estimate the axial and lateral displacements. The method was first optimized and validated on simulated data giving an accuracy of 3.3% and 10.5% for the axial and lateral estimates, respectively. Then, it was preliminarily tested in vivo on ten healthy volunteers showing its clinical applicability and feasibility. Moreover, the extracted clinical markers were in the same range as those reported in the literature. Also, the estimated peak global longitudinal strain was compared with that measured with a clinical scanner showing good correlation and negligible differences (-20.94% versus -20.31%, ${p}$ -value = 0.44). In conclusion, a novel algorithm for STE was developed: the radio frequency (RF) signals were preferred for the axial motion estimation, while envelope data were preferred for the lateral motion. Furthermore, using 2-D kernels, even for 1-D cross correlation, makes the method less sensitive to noise. © 1986-2012 IEEE.

2020

Predicting Gastric Cancer Molecular Subtypes from Gene Expression Data

Authors
Moreno, M; Sousa, A; Melé, M; Oliveira, R; G Ferreira, P;

Publication
Proceedings

Abstract

2020

yy Optical Fiber Temperature Sensors and Their Biomedical Applications

Authors
Roriz, P; Silva, S; Frazao, O; Novais, S;

Publication
SENSORS

Abstract
The use of sensors in the real world is on the rise, providing information on medical diagnostics for healthcare and improving quality of life. Optical fiber sensors, as a result of their unique properties (small dimensions, capability of multiplexing, chemical inertness, and immunity to electromagnetic fields) have found wide applications, ranging from structural health monitoring to biomedical and point-of-care instrumentation. Furthermore, these sensors usually have good linearity, rapid response for real-time monitoring, and high sensitivity to external perturbations. Optical fiber sensors, thus, present several features that make them extremely attractive for a wide variety of applications, especially biomedical applications. This paper reviews achievements in the area of temperature optical fiber sensors, different configurations of the sensors reported over the last five years, and application of this technology in biomedical applications.

2020

Optic Disc and Fovea Detection in Color Eye Fundus Images

Authors
Mendonça, AM; Melo, T; Araújo, T; Campilho, A;

Publication
Image Analysis and Recognition - 17th International Conference, ICIAR 2020, Póvoa de Varzim, Portugal, June 24-26, 2020, Proceedings, Part II

Abstract
The optic disc (OD) and the fovea are relevant landmarks in fundus images. Their localization and segmentation can facilitate the detection of some retinal lesions and the assessment of their importance to the severity and progression of several eye disorders. Distinct methodologies have been developed for detecting these structures, mainly based on color and vascular information. The methodology herein described combines the entropy of the vessel directions with the image intensities for finding the OD center and uses a sliding band filter for segmenting the OD. The fovea center corresponds to the darkest point inside a region defined from the OD position and radius. Both the Messidor and the IDRiD datasets are used for evaluating the performance of the developed methods. In the first one, a success rate of 99.56% and 100.00% are achieved for OD and fovea localization. Regarding the OD segmentation, the mean Jaccard index and Dice’s coefficient obtained are 0.87 and 0.94, respectively. The proposed methods are also amongst the top-3 performing solutions submitted to the IDRiD online challenge. © Springer Nature Switzerland AG 2020.

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