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Publications

Publications by BIO

2022

Editorial of the Special Issue from WorldCIST'20

Authors
Domingues, I; Sequeira, AF;

Publication
COMPUTATIONAL AND MATHEMATICAL ORGANIZATION THEORY

Abstract

2022

Ictal and interictal features of local field potentials recorded from the anterior thalamic nucleus of epilepsy patients performing deep brain stimulation with the Percept (TM) PC system

Authors
Lopes, E; Caldeiras, C; Rito, M; Chamadoira, C; Santos, A; Cunha, JPS; Rego, R;

Publication
EPILEPSIA

Abstract

2022

Detection of COVID-19 in Point of Care Lung Ultrasound

Authors
Maximino, J; Coimbra, MT; Pedrosa, J;

Publication
44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society, EMBC 2022, Glasgow, Scotland, United Kingdom, July 11-15, 2022

Abstract

2022

Learning Models for Traumatic Brain Injury Mortality Prediction on Pediatric Electronic Health Records

Authors
Fonseca, J; Liu, XY; Oliveira, HP; Pereira, T;

Publication
FRONTIERS IN NEUROLOGY

Abstract
BackgroundTraumatic Brain Injury (TBI) is one of the leading causes of injury related mortality in the world, with severe cases reaching mortality rates of 30-40%. It is highly heterogeneous both in causes and consequences, complicating medical interpretation and prognosis. Gathering clinical, demographic, and laboratory data to perform a prognosis requires time and skill in several clinical specialties. Machine learning (ML) methods can take advantage of the data and guide physicians toward a better prognosis and, consequently, better healthcare. The objective of this study was to develop and test a wide range of machine learning models and evaluate their capability of predicting mortality of TBI, at hospital discharge, while assessing the similarity between the predictive value of the data and clinical significance. MethodsThe used dataset is the Hackathon Pediatric Traumatic Brain Injury (HPTBI) dataset, composed of electronic health records containing clinical annotations and demographic data of 300 patients. Four different classification models were tested, either with or without feature selection. For each combination of the classification model and feature selection method, the area under the receiver operator curve (ROC-AUC), balanced accuracy, precision, and recall were calculated. ResultsMethods based on decision trees perform better when using all features (Random Forest, AUC = 0.86 and XGBoost, AUC = 0.91) but other models require prior feature selection to obtain the best results (k-Nearest Neighbors, AUC = 0.90 and Artificial Neural Networks, AUC = 0.84). Additionally, Random Forest and XGBoost allow assessing the feature's importance, which could give insights for future strategies on the clinical routine. ConclusionPredictive capability depends greatly on the combination of model and feature selection methods used but, overall, ML models showed a very good performance in mortality prediction for TBI. The feature importance results indicate that predictive value is not directly related to clinical significance.

2022

A kinesthetic teaching approach for automating micropipetting repetitive tasks

Authors
Rocha, C; Dias, J; Moreira, AP; Veiga, G; Costa, P;

Publication
INTERNATIONAL JOURNAL OF ADVANCED MANUFACTURING TECHNOLOGY

Abstract
Nowadays, a laboratory operator in the areas of chemistry, biology or medicine spends considerable time performing micropipetting procedures, a common, monotonous and repetitive task which compromises the ergonomics of individuals, namely related to wrist musculoskeletal disorders. In this work, the design of a kinesthetic teaching approach for automating the micropipetting technique is presented, allowing to redirect the operator to other non-repetitive tasks, aiming to reduce the exposure to ergonomic risks. The proposed robotic solution has an innovative gripping system capable of supporting, actuating and regulating the volume of a manual micropipette. The system is able to configure the position of diverse laboratory materials, such as lab containers and plates, on the workbench through a collaborative robotic arm, providing flexibility to adapt to different procedures. A projected human-machine interface, which combines the display of information on the workbench with an infrared based interaction device was developed, providing a more intuitive interaction between the operator and the system during the configuration and operation phases. In contrast to the majority of the existing liquid handling systems, the proposed system allows the operator to place the materials freely on the workbench and the usage of different materials' variants, facilitating the implementation of the system in any laboratory. The attained performance and ease of use of the system were very encouraging since all the defined tasks in the conducted experiments were successfully performed by users with minimum training, highlighting its potential inclusion in the laboratory routine panorama.

2022

Beyond Masks: On the Generalization of Masked Face Recognition Models to Occluded Face Recognition

Authors
Neto, PCP; Pinto, JR; Boutros, F; Damer, N; Sequeira, AF; Cardoso, JS;

Publication
IEEE ACCESS

Abstract
Over the years, the evolution of face recognition (FR) algorithms has been steep and accelerated by a myriad of factors. Motivated by the unexpected elements found in real-world scenarios, researchers have investigated and developed a number of methods for occluded face recognition (OFR). However, due to the SarS-Cov2 pandemic, masked face recognition (MFR) research branched from OFR and became a hot and urgent research challenge. Due to time and data constraints, these models followed different and novel approaches to handle lower face occlusions, i.e., face masks. Hence, this study aims to evaluate the different approaches followed for both MFR and OFR, find linked details about the two conceptually similar research directions and understand future directions for both topics. For this analysis, several occluded and face recognition algorithms from the literature are studied. First, they are evaluated in the task that they were trained on, but also on the other. These methods were picked accordingly to the novelty of their approach, proven state-of-the-art results, and publicly available source code. We present quantitative results on 4 occluded and 5 masked FR datasets, and a qualitative analysis of several MFR and OFR models on the Occ-LFW dataset. The analysis presented, sustain the interoperable deployability of MFR methods on OFR datasets, when the occlusions are of a reasonable size. Thus, solutions proposed for MFR can be effectively deployed for general OFR.

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