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Publications

Publications by CRACS

2022

Map-Optimize-Learn: Predicting Cardiac Pathology in Children and Teenagers with a Deep Learning Based Tabular Learning Method

Authors
Neto, MTRS; Dutra, I; Mollinetti, MAF;

Publication
2022 INTERNATIONAL JOINT CONFERENCE ON NEURAL NETWORKS (IJCNN)

Abstract
Convolutional Neural Networks (CNN) have been successfully applied to images, text and audio, but their performance are not so good when applied to feature-based tabular data. Exceptions are works such as TabNet and DeepInsight, which employ end-to-end approaches. In this work, we propose an alternative way of using CNNs to model tabular data where knowledge is extracted from the feature space before being introduced to the network. Our strategy, Map-Optimize-Learn (MOL), changes the shape representation of samples in order to produce suitable input data for the CNN architecture. The strategy is applied to a real-world scenario of children and teenagers with cardiac pathology and compared against baseline and state of the art Machine Learning (ML) algorithms for tabular datasets. Preliminary results suggest that the strategy has potential to improve prediction quality of tabular data over end-to-end CNN methods and classical ML methods.

2022

Sensor data modeling with Bayesian networks

Authors
Silva, C; Rodrigues, A; Jorge, A; Dutra, I;

Publication
Proceedings of the 2022 IEEE International Conference on Industry 4.0, Artificial Intelligence, and Communications Technology, IAICT 2022

Abstract
This research aims to extract knowledge of sensors behavior resorting to Bayesian networks (BNs) and dynamic Bayesian networks (DBNs), a time-based BN version. These two types of models belong to the group of probabilistic graphical models (PGMs). These graphical models can be very useful to get insights from data in order to improve sensor capabilities in the industry of fire detection systems, since it can provide the conditional dependence structure among various sensor variables. Relevant sensors with fire alerts were selected and studied at device level. We conduct a data fusion analysis since we deal with heterogeneous data sources, Remote Alert (RA) with sensor states and Condition Monitoring (CM) with numerical data. To achieve an accurate fusion of the data, a pipeline was designed to align both sources of data in a regular time interval. Furthermore, a change point detection (CPD) method was used to discretize the numerical variables. In addition, one-hot encoding was used to create binarized datasets and combine all data (RA+CM). Our modeling helps understanding the dependencies among the sensor variables, highlighting that individual devices of the same type can have a very different probabilistic behavior along the time, probably due to be installed in distinct regions. Moreover, the models helped capturing strange probabilistic sensor behavior such as a low probability of a NORMAL state happening given that states FIRE, WARNING and TROUBLE did not happen. © 2022 IEEE.

2022

AutoSW: A new automated sliding window-based change point detection method for sensor data

Authors
Nejad, EB; Silva, C; Rodrigues, A; Jorge, A; Dutra, I;

Publication
Proceedings of the 2022 IEEE International Conference on Industry 4.0, Artificial Intelligence, and Communications Technology, IAICT 2022

Abstract
Change point detection methods try to find any sudden changes in the patterns and features of a given time series. In this paper a new change point detection method is presented, where the window width is automatically calculated. The proposed algorithm, AutoSW, is based on a Sliding Window search method of the Python ruptures package and uses a subset of statistical concepts to compute a possibly optimal window width. The proposed algorithm is compared with some other popular methods such as PELT using different real-world and synthetic time series. Results show that AutoSW can perform better than PELT producing a better set of change points in the time series tested. © 2022 IEEE.

2022

A Decentralised Real Estate Transfer Verification based on Self-Sovereign Identity and Smart Contracts

Authors
Shehu, AS; Pinto, A; Correia, ME;

Publication
SECRYPT : PROCEEDINGS OF THE 19TH INTERNATIONAL CONFERENCE ON SECURITY AND CRYPTOGRAPHY

Abstract
Since its first introduction in late 90s, the use of marketplaces has continued to grow, today virtually everything from physical assets to services can be purchased on digital marketplaces, real estate is not an exception. Some marketplaces allow acclaimed asset owners to advertise their products, to which the services gets commission/percentage from proceeds of sale/lease. Despite the success recorded in the use of the marketplaces, they are not without limitations which include identity and property fraud, impersonation and the use of centralised technology with trusted parties that are prone to single point of failures (SPOF). Being one of the most valuable assets, real estate has been a target for marketplace fraud as impersonators take pictures of properties they do not own, upload them on marketplace with promising prices that lures innocent or naive buyers. This paper addresses these issues by proposing a self sovereign identity (SSI) and smart contract based framework for identity verification and verified transaction management on secure digital marketplaces. First, the use of SSI technology enable methods for acquiring verified credential (VC) that are verifiable on a decentralised blockchain registry to identify both real estate owner(s) and real estate property. Second, the smart contracts are used to negotiate the secure transfer of real estate property deeds on the marketplace. To assess the viability of our proposal we define an application scenario and compare our work with other approaches.

2022

Inbreeding and research collaborations in Portuguese higher education

Authors
Tavares, O; Sin, C; Sa, C; Bugla, S; Amaral, A;

Publication
HIGHER EDUCATION QUARTERLY

Abstract
The aim of this paper is to analyse the relationship between academic inbreeding in Portugal and research collaboration, using co-authored publications as proxies. As previous research has shown that inbreeding is detrimental for research collaborations, it is hypothesised that academic inbreeding will lead to smaller research networks and, consequently, to fewer co-authored publications outside the institution of affiliation. Relying on a large data set which merged information on academics, their inbreeding status and their publications, binomial negative and fractional models were estimated to test the hypothesis. Findings show that inbred academics have smaller research networks; while they publish most co-authored papers, the relative weight of publications written in collaboration with institutional colleagues is the highest. In contrast, non-inbred academics with foreign PhDs have larger co-authorship networks. However, they publish most single-authored papers and the weight of their international co-authorships is heaviest.

2022

Automating microsatellite screening and primer design from multi-individual libraries using Micro-Primers

Authors
Alves, F; Martins, FMS; Areias, M; Munoz Merida, A;

Publication
SCIENTIFIC REPORTS

Abstract
Analysis of intra- and inter-population diversity has become important for defining the genetic status and distribution patterns of a species and a powerful tool for conservation programs, as high levels of inbreeding could lead into whole population extinction in few generations. Microsatellites (SSR) are commonly used in population studies but discovering highly variable regions across species' genomes requires demanding computation and laboratorial optimization. In this work, we combine next generation sequencing (NGS) with automatic computing to develop a genomic-oriented tool for characterizing SSRs at the population level. Herein, we describe a new Python pipeline, named Micro-Primers, designed to identify, and design PCR primers for amplification of SSR loci from a multi-individual microsatellite library. By combining commonly used programs for data cleaning and microsatellite mining, this pipeline easily generates, from a fastq file produced by high-throughput sequencing, standard information about the selected microsatellite loci, including the number of alleles in the population subset, and the melting temperature and respective PCR product of each primer set. Additionally, potential polymorphic loci can be identified based on the allele ranges observed in the population, to easily guide the selection of optimal markers for the species. Experimental results show that Micro-Primers significantly reduces processing time in comparison to manual analysis while keeping the same quality of the results. The elapsed times at each step can be longer depending on the number of sequences to analyze and, if not assisted, the selection of polymorphic loci from multiple individuals can represent a major bottleneck in population studies.

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