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Publications

Publications by CRACS

2017

Adaptive learning for dynamic environments: A comparative approach

Authors
Costa, J; Silva, C; Antunes, M; Ribeiro, B;

Publication
ENGINEERING APPLICATIONS OF ARTIFICIAL INTELLIGENCE

Abstract
Nowadays most learning problems demand adaptive solutions. Current challenges include temporal data streams, drift and non-stationary scenarios, often with text data, whether in social networks or in business systems. Various efforts have been pursued in machine learning settings to learn in such environments, specially because of their non-trivial nature, since changes occur between the distribution data used to define the model and the current environment. In this work we present the Drift Adaptive Retain Knowledge (DARK) framework to tackle adaptive learning in dynamic environments based on recent and retained knowledge. DARK handles an ensemble of multiple Support Vector Machine (SVM) models that are dynamically weighted and have distinct training window sizes. A comparative study with benchmark solutions in the field, namely the Learn + +.NSE algorithm, is also presented. Experimental results revealed that DARK outperforms Learn + +.NSE with two different base classifiers, an SVM and a Classification and Regression Tree (CART).

2017

High Performance Computing for Computational Science - VECPAR 2016 - 12th International Conference, Porto, Portugal, June 28-30, 2016, Revised Selected Papers

Authors
Dutra, I; Camacho, R; Barbosa, JG; Marques, O;

Publication
VECPAR

Abstract

2017

Optimising the calculation of statistical functions

Authors
Rodrigues, A; Silva, C; Koerich Borges, PV; Silva, S; Dutra, I;

Publication
IJBDI

Abstract

2017

Evolvix BEST Names for semantic reproducibility across code2brain interfaces

Authors
Loewe, L; Scheuer, KS; Keel, SA; Vyas, V; Liblit, B; Hanlon, B; Ferris, MC; Yin, J; Dutra, I; Pietsch, A; Javid, CG; Moog, CL; Meyer, J; Dresel, J; McLoone, B; Loberger, S; Movaghar, A; Gilchrist Scott, M; Sabri, Y; Sescleifer, D; Pereda Zorrilla, I; Zietlow, A; Smith, R; Pietenpol, S; Goldfinger, J; Atzen, SL; Freiberg, E; Waters, NP; Nusbaum, C; Nolan, E; Hotz, A; Kliman, RM; Mentewab, A; Fregien, N; Loewe, M;

Publication
ANNALS OF THE NEW YORK ACADEMY OF SCIENCES

Abstract
Names in programming are vital for understanding the meaning of code and big data. We define code2brain (C2B) interfaces as maps in compilers and brains between meaning and naming syntax, which help to understand executable code. While working toward an Evolvix syntax for general-purpose programming that makes accurate modeling easy for biologists, we observed how names affect C2B quality. To protect learning and coding investments, C2B interfaces require long-term backward compatibility and semantic reproducibility (accurate reproduction of computational meaning fromcoder-brains to reader-brains by code alone). Semantic reproducibility is often assumed until confusing synonyms degrade modeling in biology to deciphering exercises. We highlight empirical naming priorities from diverse individuals and roles of names in different modes of computing to show how naming easily becomes impossibly difficult. We present the Evolvix BEST (Brief, Explicit, Summarizing, Technical) Names concept for reducing naming priority conflicts, test it on a real challenge by naming subfolders for the Project Organization Stabilizing Tool system, and provide naming questionnaires designed to facilitate C2B debugging by improving names used as keywords in a stabilizing programming language. Our experiences inspired us to develop Evolvix using a flipped programming language design approach with some unexpected features and BEST Names at its core.

2017

Preface

Authors
Barbosa, J; Camacho, R; Dutra, I; Marques, O;

Publication
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Abstract

2017

A qualitative research evaluation of a Portuguese computerized cancer registry

Authors
Santos Pereira, C; Cruz Correia, R; Brito, AC; Augusto, AB; Correia, ME; Bento, MJ; Antunes, L;

Publication
2017 12TH IBERIAN CONFERENCE ON INFORMATION SYSTEMS AND TECHNOLOGIES (CISTI)

Abstract
A cancer registry is a standardized tool to produce population-based data on cancer incidence and survival. Cancer registries can retrieve and store information on all cancer cases occurring in a defined population. The main sources of data on cancer cases usually include: treatment and diagnostic facilities (oncology centres or hospital departments, pathology laboratories, or imaging facilities etc.) and the official territorial death registry. The aim of this paper is to evaluate the north regional cancer registry (RORENO) of Portugal using a qualitative research. We want to characterize: the main functionalities and core processes, team involved, different healthcare institutions in the regional network and an identification of issues and potential improvements. RORENO links data of thirteen-two healthcare institutions and is responsible for the production of cancer incidence and survival report for this region. In our semi-structure interviews and observation of RORENO we identified a serious problem due to a lack of an automatic integration of data from the different sources. Most of the data are inserted manually in the system and this implies an extra effort from the RORENO team. At this moment RORENO team are still collecting data from 2011. In a near future it is crucial to automatize the integration of data linking the different healthcare institutions in the region. However, it is important to think which functionalities this system should give to the institutions in the network to maximize the engagement with the project. More than a database this should be a source of knowledge available to all the collaborative oncologic network.

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