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Publications

Publications by PHT

2018

Optical fiber tips for biological applications: From light confinement, biosensing to bioparticles manipulation

Authors
Paiva, JS; Jorge, PAS; Rosa, CC; Cunha, JPS;

Publication
BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Abstract
Background: The tip of an optical fiber has been considered an attractive platform in Biology. The simple cleaved end of an optical fiber can be machined, patterned and/or functionalized, acquiring unique properties enabling the exploitation of novel optical phenomena. Prompted by the constant need to measure and manipulate nanoparticles, the invention of the Scanning Near-field Optical Microscopy (SNOM) triggered the optimization and development of novel fiber tip microfabrication methods. In fact, the fiber tip was soon considered a key element in SNOM by confining light to sufficiently small extensions, challenging the diffraction limit. As result and in consequence of the newly proposed "Lab On Tip" concept, several geometries of fiber tips were applied in three main fields: imaging (in Microscopy/Spectroscopy), biosensors and micromanipulation (Optical Fiber Tweezers, OFTs). These are able to exert forces on microparticles, trap and manipulate them for relevant applications, as biomolecules mechanical study or protein aggregates unfolding. Scope of review: This review presents an overview of the main achievements, most impactful studies and limitations of fiber tip-based configurations within the above three fields, along the past 10 years. Major conclusions: OFTs could be in future a valuable tool for studying several cellular phenomena such as neurodegeneration caused by abnormal protein fibrils or manipulating organelles within cells. This could contribute to understand the mechanisms of some diseases or biophenomena, as the axonal growth in neurons.

2018

Optical properties of colorectal muscle in visible/NIR range

Authors
Carneiro, I; Carvalho, S; Henrique, R; Oliveira, LM; Tuchin, VV;

Publication
BIOPHOTONICS: PHOTONIC SOLUTIONS FOR BETTER HEALTH CARE VI

Abstract
Knowledge of the optical properties of tissues is necessary, since they change from tissue to tissue and can differ between normal and pathological conditions. These properties are used in light transport models with various areas of application. In general, tissues have significantly high scattering coefficient when compared to the absorption coefficient and such difference usually increases with decreasing wavelength. The study of the wavelength dependence of the optical properties has been already made for several animal and human tissues, but extensive research is still needed in this field. Considering that most of the Biophotonics techniques used in research and clinical practice use visible to NIR light, we have estimated the optical properties of colorectal muscle (muscularis propria) between 400 and 1000 nm. The samples used were collected from patients undergoing resection surgery for colorectal carcinoma. The estimated scattering coefficient for colorectal muscle decreases exponentially with wavelength from 122 cm(-1) at 400 nm to 95 cm(-1) at 650 nm and to 91 cm(-1) at 1000 nm. The absorption coefficient shows a wavelength dependence according to the behavior seen for other tissues, since it decreases from 8 cm(-1) at 400 nm to 2.6 cm(-1) at 650 nm and to 1.3 cm(-1) at 1000 nm. The estimated optical properties differ from the ones that we have previously obtained for normal and pathological colorectal mucosa. The data obtained in this study covers an extended spectral range and it can be used for planning optical clearing treatments for some wavelengths of interest.

2018

Optical fiber sensor Mach-Zehnder interferometer based on TiO<inf>2</inf> coated long period fiber grating

Authors
Vasconcelos H.; De Almeida J.M.M.M.; Jorge P.A.S.; Coelho L.;

Publication
Optics InfoBase Conference Papers

Abstract
The wavelength sensitivity and spectral resolution of Mach-Zehnder fiber interferometers based on uncoated and TiO2 coated LPFGs is presented and compared with TiO2 coated single LPFGs optical fiber sensors.

2018

Kinetics of optical properties of human colorectal tissues during optical clearing: a comparative study between normal and pathological tissues

Authors
Carneiro, I; Carvelho, S; Silva, V; Henrique, R; Oliveira, L; Tuchin, VV;

Publication
JOURNAL OF BIOMEDICAL OPTICS

Abstract
To characterize the optical clearing treatments in human colorectal tissues and possibly to differentiate between treatments of normal and pathological tissues, we have used a simple indirect method derived from Mie scattering theory to estimate the kinetics of the reduced scattering coefficient. A complementary method to estimate the kinetics of the scattering coefficient is also used so that the kinetics of the anisotropy factor and of the refractive index are also calculated. Both methods rely only on the thickness and collimated transmittance measurements made during treatment. The results indicate the expected time dependencies for the optical properties of both tissues: an increase in the refractive index and anisotropy factor and a decrease in the scattering coefficients. The similarity in the kinetics obtained for normal and pathological tissues indicates that optical clearing treatments can be applied also in pathological tissues to produce similar effects. The estimated time dependencies using experimental spectral data in the range from 400 to 1000 nm allowed us to compare the kinetics of the optical properties between different wavelengths. (C) 2018 Society of Photo-Optical Instrumentation Engineers (SPIE)

2018

Tissue optical clearing as a diagnostic tool for tissue pathology differentiation

Authors
Oliveira, LM; Carneiro, I; Carvalho, S; Henrique, R; Tuchina, DK; Timoshina, PA; Bashkatov, AN; Genina, EA; Tuchin, VV;

Publication
2018 INTERNATIONAL CONFERENCE LASER OPTICS (ICLO 2018)

Abstract
With the objective of developing a diagnostic tool, we have used the immersion optical clearing method and studied normal and pathological tissues (cancer, diabetes) under treatment by optical clearing agents (OCAs). In order to quantify pathology status OCA diffusion properties in different tissues were measured. We have demonstrated that free water content in cancerous tissues is higher than in normal.

2018

Plasmonic optical fiber sensor based on double step growth of gold nano-islands

Authors
De Almeida J.M.M.M.; Vasconcelos H.; Jorge P.A.S.; Coelho L.;

Publication
Optics InfoBase Conference Papers

Abstract
Refractive index sensors based on localized surface plasmon resonance are presented through the fabrication of gold nano-islands on top of optical fiber tips. Repeated dewetting process led to an increase of sensitivity from 60 to 186nm/RIU.

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