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Publications

Publications by Vítor Santos Costa

2022

Impact of the glycaemic sampling method in diabetes data mining

Authors
Machado, D; Costa, VS; Brandao, P;

Publication
2022 27TH IEEE SYMPOSIUM ON COMPUTERS AND COMMUNICATIONS (IEEE ISCC 2022)

Abstract
Finger-pricking is the traditional procedure for glycaemia monitoring. It is an invasive method where the person with diabetes is required to prick their finger. In recent years, continuous-glucose monitoring (CGM), a new and more convenient method of glycaemia monitoring, has become prevalent. CGM provides continuous access to glycaemic values without the need of finger-pricking. Data mining can be used to understand glycaemic values, and to ideally warn users of abnormal situations. CGM provides significantly more data than finger-pricking. Thus, the amount and value of CGM data ultimately questions the role of finger-pricking for glycaemic studies. In this work we use the OhioT1DM data set in order to study the importance of finger-prick-based data. We use Random Forest as a classification method, a robust method that tends to obtain quality results. Our results indicate that, although more demanding and scarcer, finger-prick-based glycaemic values have a significant role on diabetes management and on data mining.

2022

Typed SLD-Resolution: Dynamic Typing for Logic Programming

Authors
Barbosa, J; Florido, M; Costa, VS;

Publication
LOGIC-BASED PROGRAM SYNTHESIS AND TRANSFORMATION (LOPSTR 2022)

Abstract
The semantic foundations for logic programming are usually separated into two different approaches. The operational semantics, which uses SLD-resolution, the proof method that computes answers in logic programming, and the declarative semantics, which sees logic programs as formulas and its semantics as models. Here, we define a new operational semantics called TSLD-resolution, which stands for Typed SLD-resolution, where we include a value wrong, that corresponds to the detection of a type error at run-time. For this we define a new typed unification algorithm. Finally we prove the correctness of TSLD-resolution with respect to a typed declarative semantics.

2022

Fifty Years of Prolog and Beyond

Authors
Korner, P; Leuschel, M; Barbosa, J; Costa, VS; Dahl, V; Hermenegildo, MV; Morales, JF; Wielemaker, J; Diaz, D; Abreu, S; Ciatto, G;

Publication
THEORY AND PRACTICE OF LOGIC PROGRAMMING

Abstract
Both logic programming in general and Prolog in particular have a long and fascinating history, intermingled with that of many disciplines they inherited from or catalyzed. A large body of research has been gathered over the last 50 years, supported by many Prolog implementations. Many implementations are still actively developed, while new ones keep appearing. Often, the features added by different systems were motivated by the interdisciplinary needs of programmers and implementors, yielding systems that, while sharing the classic core language, in particular, the main aspects of the ISO-Prolog standard, also depart from each other in other aspects. This obviously poses challenges for code portability. The field has also inspired many related, but quite different languages that have created their own communities. This article aims at integrating and applying the main lessons learned in the process of evolution of Prolog. It is structured into three major parts. First, we overview the evolution of Prolog systems and the community approximately up to the ISO standard, considering both the main historic developments and the motivations behind several Prolog implementations, as well as other logic programming languages influenced by Prolog. Then, we discuss the Prolog implementations that are most active after the appearance of the standard: their visions, goals, commonalities, and incompatibilities. Finally, we perform a SWOT analysis in order to better identify the potential of Prolog and propose future directions along with which Prolog might continue to add useful features, interfaces, libraries, and tools, while at the same time improving compatibility between implementations.

2004

Query transformations for improving the efficiency of ILP systems

Authors
Costa, VS; Srinivasan, A; Camacho, R; Blockeel, H; Demoen, B; Janssens, G; Struyf, J; Vandecasteele, H; Van Laer, W;

Publication
JOURNAL OF MACHINE LEARNING RESEARCH

Abstract
Relatively simple transformations can speed up the execution of queries for data mining considerably. While some ILP systems use such transformations, relatively little is known about them or how they relate to each other. This paper describes a number of such transformations. Not all of them are novel, but there have been no studies comparing their efficacy. The main contributions of the paper are: (a) it clarifies the relationship between the transformations; (b) it contains an empirical study of what can be gained by applying the transformations; and (c) it provides some guidance on the kinds of problems that are likely to benefit from the transformations.

1993

Compile-time analysis for the parallel execution of logic programs in Andorra-1

Authors
Santos Costa, VMdM;

Publication
British Library, EThOS

Abstract

2008

LogCHEM: Interactive Discriminative Mining of Chemical Structure

Authors
Costa, VS; Fonseca, NA; Camacho, R;

Publication
2008 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE, PROCEEDINGS

Abstract
One of the most well known successes of Inductive Logic Programming (ILP) is on Structure-Activity Relationship (SAR) problems. In such problems, ILP has proved several times to be capable of constructing expert comprehensible models that hell) to explain the activity of chemical compounds based on their structure and properties. However, despite its successes on SAR problems, ILP has severe scalability problems that prevent its application oil larger datasets. In this paper we present LogCHEM, an ILP based tool for discriminative interactive mining of chemical fragments. LogCHEM tackles ILP's scalability issues in the context of SAR applications. We show that LogCHEM benefits from the flexibility of ILP both by its ability to quickly extend the original mining model, and by its ability, to interface with external tools. Furthermore, We demonstrate that LogCHEM can be used to mine effectively large chemoinformatics datasets, namely, several datasets from EPA's DSSTox database and on a dataset based on the DTP AIDS anti-viral screen.

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