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Publications

Publications by António Cunha

2022

Retinal Glaucoma Public Datasets: What Do We Have and What Is Missing?

Authors
Camara, J; Rezende, R; Pires, IM; Cunha, A;

Publication
JOURNAL OF CLINICAL MEDICINE

Abstract
Public databases for glaucoma studies contain color images of the retina, emphasizing the optic papilla. These databases are intended for research and standardized automated methodologies such as those using deep learning techniques. These techniques are used to solve complex problems in medical imaging, particularly in the automated screening of glaucomatous disease. The development of deep learning techniques has demonstrated potential for implementing protocols for large-scale glaucoma screening in the population, eliminating possible diagnostic doubts among specialists, and benefiting early treatment to delay the onset of blindness. However, the images are obtained by different cameras, in distinct locations, and from various population groups and are centered on multiple parts of the retina. We can also cite the small number of data, the lack of segmentation of the optic papillae, and the excavation. This work is intended to offer contributions to the structure and presentation of public databases used in the automated screening of glaucomatous papillae, adding relevant information from a medical point of view. The gold standard public databases present images with segmentations of the disc and cupping made by experts and division between training and test groups, serving as a reference for use in deep learning architectures. However, the data offered are not interchangeable. The quality and presentation of images are heterogeneous. Moreover, the databases use different criteria for binary classification with and without glaucoma, do not offer simultaneous pictures of the two eyes, and do not contain elements for early diagnosis.

2022

SEGMENTATION AS A PREPROCESSING TOOL FOR AUTOMATIC GRAPEVINE CLASSIFICATION

Authors
Carneiro, GA; Padua, L; Peres, E; Morais, R; Sousa, JJ; Cunha, A;

Publication
2022 IEEE INTERNATIONAL GEOSCIENCE AND REMOTE SENSING SYMPOSIUM (IGARSS 2022)

Abstract
The grapevine variety plays an important role in wine chain production, thus identifying it is crucial for control activities. However, the specialists responsible for identifying the different varieties, mainly through visual analysis, are disappearing. In this scenario, Deep Learning (DL) classification techniques become a possible solution to handle professionals' scarcity. Nevertheless, previous experiments show that trained classification models use the background information to make decisions, which should be avoided. In this paper, we present a study allowing the assessment of removing background regions from the grapevine images in the improvement classification using DL models. The Xception model is trained with a normal dataset and its segmented version. The Local Interpretable Model-Agnostic Explanations (LIME), Grad-CAM, and Grad-CAM++ approaches are used to visualize the segmentation impact in classification decisions. F1-score of 0.92 and 0.94 were achieved, respectively, for segmented-dataset and normal-dataset trained models. Despite the model trained with the segmented-dataset to achieve a worse performance, the Explainable Artificial Intelligence (XAI) approaches showed that it looks into more reliable regions when making decisions.

2022

GRAPEVINE VARIETIES IDENTIFICATION USING VISION TRANSFORMERS

Authors
Carneiro, GA; Padua, L; Peres, E; Morais, R; Sousa, JJ; Cunha, A;

Publication
2022 IEEE INTERNATIONAL GEOSCIENCE AND REMOTE SENSING SYMPOSIUM (IGARSS 2022)

Abstract
The grape variety plays an important role in the wine production chain, thus identifying it is crucial for production control. Ampelographers, professionals who identify grape varieties through plant visual analysis, are scarce, and molecular markers are expansive to identify grape varieties on a large scale. In this context, Deep Learning models become an effective way to handle ampelographers scarcity. In this work, we explore the benefit of using deep learning vision transformers architecture relative to conventional CNN to identify 12 grapevine varieties using leaf-centred RGB images acquired in the field. We train an Xception model as a baseline and four different configurations of the ViT_B model. The best model achieved 0.96 of F1-score, outperforming the state-of-the-art convolutional-based model in the used dataset.

2022

PS-INSAR TARGET CLASSIFICATION USING DEEP LEARNING

Authors
Aguiar, P; Cunha, A; Bakon, M; Ruiz Armenteros, AM; Sousa, JJ;

Publication
2022 IEEE INTERNATIONAL GEOSCIENCE AND REMOTE SENSING SYMPOSIUM (IGARSS 2022)

Abstract
Multi-temporal InSAR (MT- InSAR) observations, which enable deformation monitoring at an unprecedented scale, are usually affected by decorrelation and other noise inducing factors. Such observations (PS - Persistent scatterers), are usually in the order of several thousand, making their respective evaluation frequently computationally expensive. In the present study, we propose an approach for the detection of MT-InSAR outlying observations through the implementation of Convolutional Neural Networks (CNN) classification models. For each PS, the corresponding MT-InSAR parameters and the respective parameters of the neighboring scatterers and its relative position are considered. Tests in two independent datasets, covering the regions of Bratislava city and the suburbs of Prievidza, Slovakia, were performed. The results showed that such models offer a robust and reduced computation time method for the evaluation of MT-InSAR outlying observations. However, the applicability of these models is limited by the deformation pattern in which such models were trained.

2022

USING DEEP LEARNING FOR DETECTION AND CLASSIFICATION OF INSECTS ON TRAPS

Authors
Teixeira, AC; Ribeiro, J; Neto, A; Morais, R; Sousa, JJ; Cunha, A;

Publication
2022 IEEE INTERNATIONAL GEOSCIENCE AND REMOTE SENSING SYMPOSIUM (IGARSS 2022)

Abstract
Insect pests are the main cause of loss of productivity and quality in crops worldwide. Insect monitoring becomes necessary for the early detection of pests and thus avoiding the excessive use of pesticides. Automatic detection of insects attracted by traps is a form of monitoring. Modern data-driven methods present great results for object detection when representative datasets are available, but public datasets for insect detection are few and small. Pest24 public dataset is extensive, but noisy resulting in a poor detection rate. In this work, we aim to improve insect detection in the Pest24 dataset. We propose the creation of three sub-datasets selecting the highest represented classes, the highest colour discrepancy, and the one with the highest relative scale, respectively. Several Faster R-CNN and YOLOv5 architectures are explored, and the best results are achieved with the YOLOv5 with an mAP of 95.5%.

2022

DEEP LEARNING APPROACH FOR TERRACE VINEYARDS DETECTION FROM GOOGLE EARTH SATELLITE IMAGERY

Authors
Figueiredo, N; Neto, A; Cunha, A; Sousa, JJ; Sousa, A;

Publication
2022 IEEE INTERNATIONAL GEOSCIENCE AND REMOTE SENSING SYMPOSIUM (IGARSS 2022)

Abstract
On rugged slopes overlooking the Douro River we find the Alto Douro Wine Region in Portugal, populated by plantations in schist lands of difficult access and mostly manual work. The combined features of this region are a source of motivation to explore remote sensing techniques associated with artificial intelligence. In this paper, a preliminary approach for terrace vineyards detection is presented. This is a key-enabling task towards the achievement of important goals such as multi-temporal crop evaluation and cultures characterization. The proposed methodology consists in the application of a deep learning model (U-net) to detect the terrace vineyards using satellite images dataset acquired with Google Earth Pro. The proposed methodology showed very promising detection capabilities.

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