2017
Authors
Paiva, JS; Dias, D; Cunha, JPS;
Publication
PLOS ONE
Abstract
In recent years, safer and more reliable biometric methods have been developed. Apart from the need for enhanced security, the media and entertainment sectors have also been applying biometrics in the emerging market of user-adaptable objects/systems to make these systems more user-friendly. However, the complexity of some state-of-the-art biometric systems (e.g., iris recognition) or their high false rejection rate (e.g., fingerprint recognition) is neither compatible with the simple hardware architecture required by reduced-size devices nor the new trend of implementing smart objects within the dynamic market of the Internet of Things (IoT). It was recently shown that an individual can be recognized by extracting features from their electrocardiogram (ECG). However, most current ECG-based biometric algorithms are computationally demanding and/or rely on relatively large (several seconds) ECG samples, which are incompatible with the aforementioned application fields. Here, we present a computationally low-cost method (patent pending), including simple mathematical operations, for identifying a person using only three ECG morphology-based characteristics from a single heartbeat. The algorithm was trained/tested using ECG signals of different duration from the Physionet database on more than 60 different training/test datasets. The proposed method achieved maximal averaged accuracy of 97.450% in distinguishing each subject from a ten-subject set and false acceptance and rejection rates (FAR and FRR) of 5.710 +/- 1.900% and 3.440 +/- 1.980%, respectively, placing Beat-ID in a very competitive position in terms of the FRR/FAR among state-of-the-art methods. Furthermore, the proposed method can identify a person using an average of 1.020 heartbeats. It therefore has FRR/FAR behavior similar to obtaining a fingerprint, yet it is simpler and requires less expensive hardware. This method targets low-computational/energy-cost scenarios, such as tiny wearable devices (e.g., a smart object that automatically adapts its configuration to the user). A hardware proof-of concept implementation is presented as an annex to this paper.
2017
Authors
Goncalves, L; Novo, J; Cunha, A; Campilho, A;
Publication
PROCEEDINGS OF THE 12TH INTERNATIONAL JOINT CONFERENCE ON COMPUTER VISION, IMAGING AND COMPUTER GRAPHICS THEORY AND APPLICATIONS (VISIGRAPP 2017), VOL 6
Abstract
In lung cancer diagnosis, the design of robust Computer Aided Diagnosis (CAD) systems needs to include an adequate differentiation of benign from malignant nodules. This paper presents a CAD system for the classification of lung nodules in chest Computed Tomography (CT) scans as the way to diagnose lung cancer. The proposed method measures a set of 295 heterogeneous characteristics, including morphology, intensity or texture features, that were used as input of different KNN and SVM classifiers. The system was modeled and trained using a groundtruth provided by specialists taken from a public lung image dataset, the Lung Image Database Consortium and Image Database Resource Initiative (LIDC-IDRI). This image dataset includes chest CT scans with lung nodule location together with information about the degree of malignancy, among other properties, provided by multiple expert clinicians. In particular, the computed degree of malignancy try to follow the manual labeling by the different radiologists. Promising results were obtained with a first order SVM with an exponential kernel achieving an area under the receiver operating characteristic curve of 96.2 +/- 0.5% when compared with the groundtruth provided in the public CT lung image dataset.
2017
Authors
Bria, A; Marrocco, C; Galdran, A; Campilho, A; Marchesi, A; Mordang, JJ; Karssemeijer, N; Molinara, M; Tortorella, F;
Publication
IMAGE ANALYSIS AND PROCESSING (ICIAP 2017), PT II
Abstract
Microcalcifications are early indicators of breast cancer that appear on mammograms as small bright regions within the breast tissue. To assist screening radiologists in reading mammograms, supervised learning techniques have been found successful to detect micro-calcifications automatically. Among them, Convolutional Neural Networks (CNNs) can automatically learn and extract low-level features that capture contrast and spatial information, and use these features to build robust classifiers. Therefore, spatial enhancement that enhances local contrast based on spatial context is expected to positively influence the learning task of the CNN and, as a result, its classification performance. In this work, we propose a novel spatial enhancement technique for microcalcifications based on the removal of haze, an apparently unrelated phenomenon that causes image degradation due to atmospheric absorption and scattering. We tested the influence of dehazing of digital mammograms on the microcalcification detection performance of two CNNs inspired by the popular AlexNet and VGGnet. Experiments were performed on 1, 066 mammograms acquired with GE Senographe systems. Statistically significantly better microcalcification detection performance was obtained when dehazing was used as preprocessing. Results of dehazing were superior also to those obtained with Contrast Limited Adaptive Histogram Equalization (CLAHE).
2017
Authors
Carneiro, I; Carvalho, S; Henrique, R; Oliveira, L; Tuchin, VV;
Publication
JOURNAL OF BIOMEDICAL OPTICS
Abstract
The optical dispersion and water content of human liver were experimentally studied to estimate the optical dispersions of tissue scatterers and dry matter. Using temporal measurements of collimated transmittance [T-c(t)] of liver samples under treatment at different glycerol concentrations, free water and diffusion coefficient (D-gl) of glycerol in liver were found as 60.0% and 8.2 x 10(-7) cm(2)/s, respectively. Bound water was calculated as the difference between the reported total water of 74.5% and found free water. The optical dispersion of liver was calculated from the measurements of refractive index (Rl) of tissue samples made for different wavelengths between 400 and 1000 nm. Using liver and water optical dispersions at 20 degrees C and the free and total water, the dispersions for liver scatterers and dry matter were calculated. The estimated dispersions present a decreasing behavior with wavelength. The dry matter dispersion shows higher Rl values than liver scatterers, as expected. Considering 600 nm, dry matter has an Rl of 1.508, whereas scatterers have an Rl of 1.444. These dispersions are useful to characterize the Rl matching mechanism in optical clearing treatments, provided that [T-c(t)] and thickness measurements are performed during treatment. The knowledge of D-gl is also important for living tissue cryoprotection applications. (C) 2017 Society of Photo-Optical Instrumentation Engineers (SPIE)
2017
Authors
Pereira, T; Almeida, PR; Cunha, JPS; Aguiar, A;
Publication
BIOMEDICAL PHYSICS & ENGINEERING EXPRESS
Abstract
Heart rate variability (HRV) analysis has been used as a quantitative marker of the autonomous nervous system activity to measure mental stress. Wearable sensors have been emerging as a solution to collect HRV data for stress assessment in a real context, however such studies raise additional requirements. The wearable system must be minimally obtrusive to allow the subjects to perform their tasks without interference, and inconspicuous to avoid the anxiety associated with wearing medical devices in public. The purpose of this study was to quantify the accuracy trade-off in the use of a chest band heart rate sensor that is less intrusive and less costly than a wearable electrocardiogram (ECG). The HRV metrics extracted from a chest band heart rate monitor, Zephyr HxM (TM) (Zph (TM)), were compared with those extracted from an ECG certified medical device, Vital Jacket (TM) (VJ (TM)). The two systems were worn simultaneously. under laboratory conditions by a population of 14 young and healthy subjects, aged 20 to 26 years, under the stress induced by the Trier Social Stress Test (TSST) procedure. The results showed a mean difference between RR intervals of 9 ms; a. root-mean square error. (RMSE) of less than 8% and. a Pearson's correlation higher than 0.946, considering all TSST phases. In the HRV analysis, the average of all normal intervals (AVNN) showed errors less than 2% between the two systems with a correlation higher than 0.99 for all TSST phases. We thus conclude that the used chest band sensor represents an alternative to the current wearable medical devices to monitor RR intervals, and could be used for mental stress monitoring similar to the TSST protocol.
2017
Authors
Teixeira, V; Camacho, R; Ferreira, PG;
Publication
2017 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM)
Abstract
Cancer genome projects are characterizing the genome, epigenome and transcriptome of a large number of samples using the latest high-throughput sequencing assays. The generated data sets pose several challenges for traditional statistical and machine learning methods. In this work we are interested in the task of deriving the most informative genes from a cancer gene expression data set. For that goal we built denoising autoencoders (DAE) and stacked denoising autoencoders and we studied the influence of the input nodes on the final representation of the DAE. We have also compared these deep learning approaches with other existing approaches. Our study is divided into two main tasks. First, we built and compared the performance of several feature extraction methods as well as data sampling methods using classifiers that were able to distinguish the samples of thyroid cancer patients from samples of healthy persons. In the second task, we have investigated the possibility of building comprehensible descriptions of gene expression data by using Denoising Autoencoders and Stacked Denoising Autoencoders as feature extraction methods. After extracting information related to the description built by the network, namely the connection weights, we devised post-processing techniques to extract comprehensible and biologically meaningful descriptions out of the constructed models. We have been able to build high accuracy models to discriminate thyroid cancer from healthy patients but the extraction of comprehensible models is still very limited.
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