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Publications

Publications by BIO

2014

Segmentation of the Vascular Network of the Retina

Authors
Mendonça, A; Dashtbozorg, B; Campilho, A;

Publication
Image Analysis and Modeling in Ophthalmology

Abstract

2014

ABrIL - Advanced Brain Imaging Lab.: a cloud based computation environment for cooperative neuroimaging projects

Authors
Neves Tafula, SMN; da Silva, NM; Rozanski, VE; Silva Cunha, JPS;

Publication
2014 36TH ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY (EMBC)

Abstract
Neuroscience is an increasingly multidisciplinary and highly cooperative field where neuroimaging plays an important role. Neuroimaging rapid evolution is demanding for a growing number of computing resources and skills that need to be put in place at every lab. Typically each group tries to setup their own servers and workstations to support their neuroimaging needs, having to learn from Operating System management to specific neuroscience software tools details before any results can be obtained from each setup. This setup and learning process is replicated in every lab, even if a strong collaboration among several groups is going on. In this paper we present a new cloud service model - Brain Imaging Application as a Service (BiAaaS) - and one of its implementation - Advanced Brain Imaging Lab (ABrIL) - in the form of an ubiquitous virtual desktop remote infrastructure that offers a set of neuroimaging computational services in an interactive neuroscientist-friendly graphical user interface (GUI). This remote desktop has been used for several multi-institution cooperative projects with different neuroscience objectives that already achieved important results, such as the contribution to a high impact paper published in the January issue of the Neuroimage journal. The ABrIL system has shown its applicability in several neuroscience projects with a relatively low-cost, promoting truly collaborative actions and speeding up project results and their clinical applicability.

2014

Characterization of an Acoustic Based Device for Local Arterial Stiffness Assessment

Authors
Pereira, HC; Contente, M; Almeida, V; Pereira, T; Simoes, JB; Cardoso, J; Correia, C; Pereira, HC; Simoes, JB; Maldonado, J; Pereira, T;

Publication
BIOMEDICAL ENGINEERING SYSTEMS AND TECHNOLOGIES (BIOSTEC 2013)

Abstract
Arterial stiffness, recognized as an independent predictor of cardiovascular events, can be assessed non-invasively by regional and local methods. The present work proposes and describes a novel and low-cost device, based on a double-headed acoustic probe (AP), to assess local arterial stiffness, by means of pulse wave velocity (PWV) measurements. Local PWV is measured over the carotid artery and relies on the determination of the time delay between the signals acquired simultaneously by both acoustic sensors, placed at a fixed distance. The AP was characterized with dedicated test setups, in order to evaluate its performance concerning waveform analysis, repeatability, crosstalk effect and time resolution. Results show that AP signals are repeatable and crosstalk effect do not interfere with its time resolution, when the cross-correlation algorithm for time delay estimation is used. The AP's effectiveness in measuring higher PWV (14 m/s), with a relative error less than 5 %, when using two uncoupled APs, was also demonstrated. Finally, its clinical feasibility was investigated, in a set of 17 healthy subjects, in which local PWV and other hemodynamic parameters were measured. Carotid PWV yielded a mean value of 2.96 +/- 1.08 m/s that is in agreement with the values obtained in other reference studies.

2014

Iris liveness detection methods in the mobile biometrics scenario

Authors
Sequeira, AF; Murari, J; Cardoso, JS;

Publication
PROCEEDINGS OF THE 2014 INTERNATIONAL JOINT CONFERENCE ON NEURAL NETWORKS (IJCNN)

Abstract
Biometric systems based on iris are vulnerable to direct attacks consisting on the presentation of a fake iris to the sensor (a printed or a contact lenses iris image, among others). The mobile biometrics scenario stresses the importance of assessing the security issues. The application of countermeasures against this type of attacking scheme is the problem addressed in the present paper. Widening a previous work, several state-of-the-art iris liveness detection methods were implemented and adapted to a less-constrained scenario. The proposed method combines a feature selection step prior to the use of state-of-the-art classifiers to perform the classification based upon the "best features". Five well known existing databases for iris liveness purposes (Biosec, Clarkson, NotreDame and Warsaw) and a recently published database, MobBIOfake, with real and fake images captured in the mobile scenario were tested. The results obtained suggest that the automated segmentation step does not degrade significantly the results.

2014

Automatic Heart Sound Segmentation and Murmur Detection in Pediatric Phonocardiograms

Authors
Pedrosa, J; Castro, A; Vinhoza, TTV;

Publication
2014 36TH ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY (EMBC)

Abstract
The digital analysis of heart sounds has revealed itself as an evolving field of study. In recent years, numerous approaches to create decision support systems were attempted. This paper proposes two novel algorithms: one for the segmentation of heart sounds into heart cycles and another for detecting heart murmurs. The segmentation algorithm, based on the autocorrelation function to find the periodic components of the PCG signal had a sensitivity and positive predictive value of 89.2% and 98.6%, respectively. The murmur detection algorithm is based on features collected from different domains and was evaluated in two ways: a random division between train and test set and a division according to patients. The first returned sensitivity and specificity of 98.42% and 97.21% respectively for a minimum error of 2.19%. The second division had a far worse performance with a minimum error of 33.65%. The operating point was chosen at sensitivity 69.67% and a specificity 46.91% for a total error of 38.90% by varying the percentage of segments classified as murmurs needed for a positive murmur classification.

2014

MobILive 2014-Mobile Iris Liveness Detection Competition

Authors
Sequeira, AF; Oliveira, HP; Monteiro, JC; Monteiro, JP; Cardoso, JS;

Publication
2014 IEEE/IAPR INTERNATIONAL JOINT CONFERENCE ON BIOMETRICS (IJCB 2014)

Abstract
Biometric systems based on iris are vulnerable to several attacks, particularly direct attacks consisting on the presentation of a fake iris to the sensor. The development of iris liveness detection techniques is crucial for the deployment of iris biometric applications in daily life specially in the mobile biometric field. The 1st Mobile Iris Liveness Detection Competition (MobILive) was organized in the context of IJCB2014 in order to record recent advances in iris liveness detection. The goal for (MobILive) was to contribute to the state of the art of this particular subject. This competition covered the most common and simple spoofing attack in which printed images from an authorized user are presented to the sensor by a non-authorized user in order to obtain access. The benchmark dataset was the MobBIOfake database which is composed by a set of 800 iris images and its corresponding fake copies (obtained from printed images of the original ones captured with the same handheld device and in similar conditions). In this paper we present a brief description of the methods and the results achieved by the six participants in the competition. © 2014 IEEE.

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