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Publications

Publications by BIO

2014

Submicron Surface Vibration Profiling Using Doppler Self-Mixing Techniques

Authors
Pereira, T; Sequeira, M; Vaz, P; Pereira, HC; Correia, C; Cardoso, J; Tomé,;

Publication
Advances in Optics

Abstract
Doppler self-mixing laser probing techniques are often used for vibration measurement with very high accuracy. A novel optoelectronic probe solution is proposed, based on off-the-shelf components, with a direct reflection optical scheme for contactless characterization of the target’s movement. This probe was tested with two test bench apparatus that enhance its precision performance, with a linear actuator at low frequency (35?µm, 5–60?Hz), and its dynamics, with disc shaped transducers for small amplitude and high frequency (0.6?µm, 100–2500?Hz). The results, obtained from well-established signal processing methods for self-mixing Doppler signals, allowed the evaluation of vibration velocity and amplitudes with an average error of less than 10%. The impedance spectrum of piezoelectric (PZ) disc target revealed a maximum of impedance (around 1?kHz) for minimal Doppler shift. A bidimensional scan over the PZ disc surface allowed the categorization of the vibration mode (0,?1) and explained its deflection directions. The feasibility of a laser vibrometer based on self-mixing principles and supported by tailored electronics able to accurately measure submicron displacements was, thus, successfully demonstrated.

2014

Optic Disk Localization for Gray-Scale Retinal Images Based on Patch Filtering

Authors
Sattar, F; Campilho, A; Kamel, M;

Publication
IMAGE ANALYSIS AND RECOGNITION, ICIAR 2014, PT II

Abstract
In this paper, an optic disk (OD) localization method is proposed for the retinal images based on a novel patch filtering approach. The patch filtering has been performed sequentially based on clustering in two stages. In the first stage, the patches are selected exploiting an 'isotropic' measure based on the ratio of maximum and minimum eigenvalues of the moment matrix representing the structure tensor. In the second stage, the patch filtering is based on the saliency measure. Finally, the optic disk is located from the centroids of the selected patches. Promising results are obtained for the low-contrast pathological retinal images using STARE database providing high localization accuracy.

2014

Pulse pressure waveform estimation using distension profiling with contactless optical probe

Authors
Pereira, T; Santos, I; Oliveira, T; Vaz, P; Pereira, T; Santos, H; Pereira, H; Correia, C; Cardoso, J;

Publication
MEDICAL ENGINEERING & PHYSICS

Abstract
The pulse pressure waveform has, for long, been known as a fundamental biomedical signal and its analysis is recognized as a non-invasive, simple, and resourceful technique for the assessment of arterial vessels condition observed in several diseases. In the current paper, waveforms from non-invasive optical probe that measures carotid artery distension profiles are compared with the waveforms of the pulse pressure acquired by intra-arterial catheter invasive measurement in the ascending aorta. Measurements were performed in a study population of 16 patients who had undergone cardiac catheterization. The hemodynamic parameters: area under the curve (AUC), the area during systole (AS) and the area during diastole (AD), their ratio (AD/AS) and the ejection time index (ETI), from invasive and non-invasive measurements were compared. The results show that the pressure waveforms obtained by the two methods are similar, with 13% of mean value of the root mean square error (RMSE). Moreover, the correlation coefficient demonstrates the strong correlation. The comparison between the AUCs allows the assessment of the differences between the phases of the cardiac cycle. In the systolic period the waveforms are almost equal, evidencing greatest clinical relevance during this period. Slight differences are found in diastole, probably due to the structural arterial differences. The optical probe has lower variability than the invasive system (13% vs 16%). This study validates the capability of acquiring the arterial pulse waveform with a non-invasive method, using a non-contact optical probe at the carotid site with residual differences from the aortic invasive measurements.

2014

Use of laser speckle and entropy computation to segment images of diffuse objects with longitudinal motion.

Authors
Vaz, P; Capela, D; Pereira, T; Correia, C; Ferreira, R; Humeau Heurtier, A; Cardoso, J;

Publication
SECOND INTERNATIONAL CONFERENCE ON APPLICATIONS OF OPTICS AND PHOTONICS

Abstract
A system using laser speckle effect is proposed to segment images reflecting vibration movements of diffuse targets. Longitudinal movements are difficult to identify when simple imaging systems are used. The proposed system produces a two dimensional segmentation of the target and it is sensitive to longitudinal movements. The speckle effect, produced when coherent light is reflected and interferes when hitting rough surfaces, can be used in order to accomplish this purpose. A pattern with high and low intensity spots is observed depending on the illuminated scene. In our optical system, two silicone membranes are illuminated using a beam expanded laser source and their patterns are recorded using a video camera. One of the membranes experiences a longitudinal controlled movement while the remaining scene is still. Speckle data is processed using a temporal gradient and a regional entropy computation. This method produces a binary individual pixel classification. Four sets of parameters have been tested for the entropy computation and the area under the receiver operating characteristic (ROC) curve was used to select the best one. The selected set-up achieved a ROC value of 0.9879. A data set with 12 different membrane velocities was used to define the threshold that maximizes the classifier accuracy. This threshold was applied to a validation data-set composed by 4 sinusoidal movements with distinct velocities. The accuracy of this technique has achieved values between 92% and 97%. The results show that the target was accurately identified with the optical non-contact apparatus and the developed algorithm.

2014

3D Multimodal Visualization of Subdural Electrodes with Cerebellum Removal to Guide Epilepsy Resective Surgery Procedures

Authors
da Silva, NM; Rego, R; Silva Cunha, JPS;

Publication
IMAGE ANALYSIS AND RECOGNITION, ICIAR 2014, PT II

Abstract
Patients with medically refractory epilepsy may benefit from surgical resection of the epileptic focus. Subdural electrodes are implanted to accurately locate the seizure onset and locate the eloquent areas to be spared. However, the visualization of the subdural electrodes may be limited by the current methods. The aim of this work was to assist physicians in the localization of subdural electrodes in relation to anatomical landmarks using co-registration methods and by removing the cerebellum from MRI images. Three patients with refractory epilepsy were studied, in whom subdural electrodes were implanted. All electrodes were correctly localized in a 3D view over the cortex and their visualization was improved by the removal of cerebellum. This method promises to be useful in the optimization of the surgical plan.

2014

Pine Decay Assessment by Means of Electrical Impedance Spectroscopy

Authors
Borges, E; Sequeira, M; Cortez, A; Pereira, HC; Pereira, T; Almeida, V; Vasconcelos, T; Duarte, I; Nazare, N; Cardoso, J; Correia, C;

Publication
BIOMEDICAL ENGINEERING SYSTEMS AND TECHNOLOGIES (BIOSTEC 2013)

Abstract
Plant diseases, such as the pinewood disease, PWD, have become a problem of economical and forestall huge proportions. These diseases, that are asymptomatic and characterized by a fast spread, have no cure developed to date. Besides, there are no technical means to diagnose the disease in situ, without causing tree damage, and help to assist the forest management. Herein is proposed a portable and non-damage system, based on electrical impedance spectroscopy, EIS, for biological applications. In fact, EIS has been proving efficacy and utility in wide range of areas. However, although commercial equipment is available, it is expensive and unfeasible for in vivo and in field applications. The developed EIS system is able to perform AC current or voltage scans, within a selectable frequency range, and its effectiveness in assessing pine decay was proven. The procedure and the results obtained for a population of 24 young pine trees (Pinus pinaster Aiton) are presented. Pine trees were kept in a controlled environment and were inoculated with the nematode (Bursaphelenchus xylophilus Nickle), that causes the PWD, and also with bark beetles (Tomicus destruens Wollaston). The obtained results may constitute a first innovative approach to the diagnosis of such types of diseases.

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