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Publicações

Publicações por BIO

2019

A Dynamic Mode Decomposition Approach with Hankel Blocks to Forecast Multi-Channel Temporal Series

Autores
Filho, EV; Dos Santos, PL;

Publicação
IEEE Control Systems Letters

Abstract
Forecasting is a task with many concerns, such as the size, quality, and behavior of the data, the computing power to do it, etc. This letter proposes the dynamic mode decomposition (DMD) as a tool to predict the annual air temperature and the sales of a stores' chain. The DMD decomposes the data into its principal modes, which are estimated from a training data set. It is assumed that the data is generated by a linear time-invariant high order autonomous system. These modes are useful to find the way the system behaves and to predict its future states, without using all the available data, even in a noisy environment. The Hankel block allows the estimation of hidden oscillatory modes, by increasing the order of the underlying dynamical system. The proposed method was tested in a case study consisting of the long term prediction of the weekly sales of a chain of stores. The performance assessment was based on the best fit percentage index. The proposed method is compared with three neural network-based predictors. © 2017 IEEE.

2019

Full-body motion assessment: Concurrent validation of two body tracking depth sensors versus a gold standard system during gait

Autores
Vilas Boas, MD; Pereira Choupina, HMP; Rocha, AP; Fernandes, JM; Silva Cunha, JPS;

Publicação
JOURNAL OF BIOMECHANICS

Abstract
RGB-D cameras provide 3-D body joint data in a low-cost, portable and non-intrusive way, when compared with reference motion capture systems used in laboratory settings. In this contribution, we evaluate the validity of both Microsoft Kinect versions (v1 and v2) for motion analysis against a Qualisys system in a simultaneous protocol. Two different walking directions in relation to the Kinect (towards - WT, and away - WA) were explored. For each gait trial, measures related with all body parts were computed: velocity of all joints, distance between symmetrical joints, and angle at some joints. For each measure, we compared each Kinect version and Qualisys by obtaining the mean true error and mean absolute error, Pearson's correlation coefficient, and optical-to-depth ratio. Although both Kinect v1 and v2 and/or WT and WA data present similar accuracy for some measures, better results were achieved, overall, when using WT data provided by the Kinect v2, especially for velocity measures. Moreover, the velocity and distance presented better results than angle measures. Our results show that both Kinect versions can be an alternative to more expensive systems such as Qualisys, for obtaining distance and velocity measures as well as some angles metrics (namely the knee angles). This conclusion is important towards the off-lab non-intrusive assessment of motor function in different areas, including sports and healthcare.

2019

A Kernel Principal Component Regressor for LPV System Identification

Autores
dos Santos, PL; Perdicoulis, TPA;

Publicação
IFAC PAPERSONLINE

Abstract
This article describes a Kernel Principal Component Regressor (KPCR) to identify Auto Regressive eXogenous (ARX) Linear Parmeter Varying (LPV) models. The new method differs from the Least Squares Support Vector Machines (LS-SVM) algorithm in the regularisation of the Least Squares (LS) problem, since the KPCR only keeps the principal components of the Gram matrix while LS-SVM performs the inversion of the same matrix after adding a regularisation factor. Also, in this new approach, the LS problem is formulated in the primal space but it ends up being solved in the dual space overcoming the fact that the regressors are unknown. The method is assessed and compared to the LS-SVM approach through 2 Monte Carlo (MC) experiments. Every experiment consists of 100 runs of a simulated example, and a different noise level is used in each experiment,with Signal to Noise Ratios of 20db and 10db, respectively. The obtained results are twofold, first the performance of the new method is comparable to the LS-SVM, for both noise levels, although the required calculations are much faster for the KPCR. Second, this new method reduces the dimension of the primal space and may convey a way of knowing the number of basis functions required in the Kernel. Furthermore, having a structure very similar to LS-SVM makes it possible to use this method in other types of models, e.g. the LPV state-space model identification.

2019

A Single-Resolution Fully Convolutional Network for Retinal Vessel Segmentation in Raw Fundus Images

Autores
Araujo, RJ; Cardoso, JS; Oliveira, HP;

Publicação
IMAGE ANALYSIS AND PROCESSING - ICIAP 2019, PT II

Abstract
The segmentation of retinal vessels in fundus images has been heavily focused in the past years, given their relevance in the diagnosis of several health conditions. Even though the recent advent of deep learning allowed to foster the performance of computer-based algorithms in this task, further improvement concerning the detection of vessels while suppressing background noise has clinical significance. Moreover, the best performing state-of-the-art methodologies conduct patch-based predictions. This, put together with the preprocessing techniques used in those methodologies, may hinder their use in screening scenarios. Thus, in this paper, we explore a fully convolutional setting that takes raw fundus images and allows to combine patch-based training with global image prediction. Our experiments on the DRIVE, STARE and CHASEDB1 databases show that the proposed methodology achieves state-of-the-art performance in the first and the last, allowing at the same time much faster segmentation of new images.

2019

Deep Vesselness Measure from Scale-Space Analysis of Hessian Matrix Eigenvalues

Autores
Araújo, RJ; Cardoso, JS; Oliveira, HP;

Publicação
PATTERN RECOGNITION AND IMAGE ANALYSIS, IBPRIA 2019, PT II

Abstract
The enhancement of tubular structures such as vessels in medical images has been addressed in the past, aiming for easier extraction and or visualization of such structures by professionals. Some literature methodologies propose vesselness measures whose design is motivated by local properties of vascular networks and how these influence the eigenvalues of the Hessian matrix. However, past work fails to combine properly the scale-space and neighborhood information, thus leading to the proposal of suboptimal vesselness measures. In this paper, we show that a shallow convolutional neural network is able to learn more optimal embedding spaces from the eigenvalue analysis at different scales, thus leading to a stronger vessel enhancement. Additionally, we also show that such a system maintains one of the biggest advantages of Hessian-based vesselness measures, which is the robustness to data with varying statistics. © 2019, Springer Nature Switzerland AG.

2019

Wide Residual Network for Lung-Rads (TM) Screening Referral

Autores
Ferreira, CA; Aresta, G; Cunha, A; Mendonca, AM; Campilho, A;

Publicação
2019 6TH IEEE PORTUGUESE MEETING IN BIOENGINEERING (ENBENG)

Abstract
Lung cancer has an increasing preponderance in worldwide mortality, demanding for the development of efficient screening methods. With this in mind, a binary classification method using Lung-RADS (TM) guidelines to warn changes in the screening management is proposed. First, having into account the lack of public datasets for this task, the lung nodules in the LIDC-IDRI dataset were re-annotated to include a Lung-RADS (TM)-based referral label. Then, a wide residual network is used for automatically assessing lung nodules in 3D chest computed tomography exams. Unlike the standard malignancy prediction approaches, the proposed method avoids the need to segment and characterize lung nodules, and instead directly defines if a patient should be submitted for further lung cancer tests. The system achieves a nodule-wise accuracy of 0.87 +/- 0.02.

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