Abstract

Abstract
This work introduces the MassSeg-Framework, a fully automatic two-stage pipeline for breast mass analysis in mammography that integrates YOLOv11-based detection with Chan-Vese ACM refinement to achieve accurate mass localization and segmentation with a lightweight computational footprint. The framework was trained and evaluated on two publicly available datasets using consistent experimental protocols. In the detection stage, YOLOv11-nano was the most effective architecture, with a confidence threshold of 0.4, achieving statistically significant mAP50 values of 0.862 and 0.709 on the dINbreast and dCBIS datasets, respectively. These results confirm that a moderate threshold preserves clinically relevant true-positive candidates, which is particularly important for screening-oriented settings where missed lesions are costly. In the segmentation stage, the proposed framework achieved mean DICE scores of 0.721 and 0.700 on the test sets of the same datasets, demonstrating consistent overlap with expert annotations. Compared with state-of-the-art approaches that commonly assume lesion-centered ROIs or rely on heavier backbones, the proposed pipeline addresses a more realistic scenario by performing automatic detection followed by segmentation while maintaining substantially lower computational requirements. This balance between performance and efficiency makes the MassSeg-Framework a promising tool for scalable mammography analysis, particularly in resource-constrained environments or high-throughput screening workflows that require rapid processing.

Abstract
Providing healthcare professionals with quick access to structured standardized information enables comprehensive analysis and improves clinical decision-making. However, an important part of the records in health institutions is in the form of free text. This paper proposes a pipeline that automatically extracts medical information from Electronic Medical Records (EMRs), based on large language models (LLMs) and a domain ontology defined and validated in collaboration with a medical expert. The output is a knowledge graph of clinical narratives that can be used to search through repositories of EMRs or discover new facts. We showcase our approach on a set of Portuguese clinical texts of cases of Acute Myeloid Leukemia (AML) guided by one medical expert. We evaluate the quality of the extraction and of the knowledge graph.

Abstract
Subgroup discovery aims to identify interpretable segments of a dataset where model behavior deviates from global trends. Traditionally, this involves uncovering patterns among data instances with respect to a target property, such as class labels or performance metrics. For example, classification accuracy can highlight subpopulations where models perform unusually well or poorly. While effective for model auditing and failure analysis, accuracy alone provides a limited view, as it does not reflect model confidence or sources of uncertainty. This work proposes a complementary approach: subgroup discovery using model uncertainty. Rather than identifying where the model fails, we focus on where it is systematically uncertain, even when predictions are correct. Such uncertainty may arise from intrinsic data ambiguity (aleatoric) or poor data representation in training (epistemic). It can highlight areas of the input space where the model's predictions are less robust or reliable. We evaluate the feasibility of this approach through controlled experiments on the classification of synthetic data and the Iris dataset. While our findings are exploratory and qualitative, they suggest that uncertainty-based subgroup discovery may uncover interpretable regions of interest, providing a promising direction for model auditing and analysis.

Abstract
The ever-increasing volume of data produced in Healthcare demands solutions capable of automatically extracting the relevant elements of their narratives. However, given privacy regulations, bureaucratic procedures, and annotation efforts, the development of said solutions via Natural Language Processing (NLP) systems becomes hindered due to training data scarcity. Such scarcity increases when we consider languages and language varieties with lower resource availability, such as European and Brazilian Portuguese. To address this problem, we propose a Large Language Model (LLM)-based SDG (Synthetic Data Generation) framework to generate and annotate synthetic clinical texts for medical Named-Entity Recognition (NER). The SDG framework consists of a system/user prompt augmented with real examples, powered by GPT-4o. Our results show that, by feeding the framework few real clinical annotated texts, we can generate synthetic data capable of increasing the performance of NER models with respect to their non-augmented counterparts. In addition, the reduction of the BLEU scores in the generated texts indicates a decrease in the risk of privacy disclosure while ensuring greater lexical diversity. These results highlight the potential of synthetic data as a solution to overcome human annotation bottlenecks and privacy concerns, laying the groundwork for future research in clinical NLP across tasks, domains, and low-resource languages.

Abstract
One strategy for constructing an artificial neural network with multiple hidden layers is to insert layers incrementally in stages. However, for this approach to be effective, each newly added layer must be properly aligned with the previous layers to avoid degradation of the network output and preserve the already learned knowledge. Ideally, inserting new layers should expand the network's search space, enabling it to explore more complex representations and ultimately improve overall performance. In this work, we present a novel method for layer insertion in stacked autoencoder networks. The method developed maintains the learning obtained before the layer insertion and allows the acquisition of new knowledge; therefore, it is denoted collaborative. This approach allows this kind of neural network to evolve and learn effectively, while significantly reducing the design time. Unlike traditional methods, it addresses the common challenges associated with manually defining the number of layers and the number of neurons in each layer. By automating this aspect of network design, the proposed method promotes scalability and adaptability between tasks. The effectiveness of the approach was validated on multiple binary classification datasets using neural networks initialized with various architectures. The experimental results demonstrate that the method maintains performance while streamlining the architectural design process.