Ricardo Gonçalves Macedo

Abstract

Abstract
Modern I/O applications that run on HPC infrastructures are increasingly becoming read and metadata intensive. However, having multiple applications submitting large amounts of metadata operations can easily saturate the shared parallel file system's metadata resources, leading to overall performance degradation and I/O unfairness. We present PADLL, an application and file system agnostic storage middleware that enables QoS control of data and metadata workflows in HPC storage systems. It adopts ideas from Software-Defined Storage, building data plane stages that mediate and rate limit POSIX requests submitted to the shared file system, and a control plane that holistically coordinates how all I/O workflows are handled. We demonstrate its performance and feasibility under multiple QoS policies using synthetic benchmarks, real-world applications, and traces collected from a production file system. Results show that PADLL can enforce complex storage QoS policies over concurrent metadata-aggressive jobs, ensuring fairness and prioritization.

Abstract
We present DIO, a generic tool for observing inefficient and erroneous I/O interactions between applications and in-kernel storage systems that lead to performance, dependability, and correctness issues. DIO facilitates the analysis and enables near real-time visualization of complex I/O patterns for data-intensive applications generating millions of storage requests. This is achieved by non-intrusively intercepting system calls, enriching collected data with relevant context, and providing timely analysis and visualization for traced events. We demonstrate its usefulness by analyzing two production-level applications. Results show that DIO enables diagnosing resource contention in multi-threaded I/O that leads to high tail latency and erroneous file accesses that cause data loss.

Abstract
We present DIO, a generic tool for observing inefficient and erroneous I/O interactions between applications and in-kernel storage backends that lead to performance, dependability, and correctness issues. DIO eases the analysis and enables near real-time visualization of complex I/O patterns for data-intensive applications generating millions of storage requests. This is achieved by non-intrusively intercepting system calls, enriching collected data with relevant context, and providing timely analysis and visualization for traced events. We demonstrate its usefulness by analyzing four production-level applications. Results show that DIO enables diagnosing inefficient I/O patterns that lead to poor application performance, unexpected and redundant I/O calls caused by high-level libraries, resource contention in multithreaded I/O that leads to high tail latency, and erroneous file accesses that cause data loss. Moreover, through a detailed evaluation, we show that, when comparing DIO's inline diagnosis pipeline with a similar state-of-the-art solution, our system captures up to 28x more events while keeping tracing performance overhead between 14% and 51%.

Abstract
We present MONARCH, a framework-agnostic storage middleware that transparently employs storage tiering to accelerate Deep Learning (DL) training. It leverages existing storage tiers of modern supercomputers (i.e., compute node's local storage and shared parallel file system (PFS)), while considering the I/O patterns of DL frameworks to improve data placement across tiers. MONARCH aims at accelerating DL training and decreasing the I/O pressure imposed over the PFS. We apply MONARCH to TensorFlow and PyTorch, while validating its performance and applicability under different models and dataset sizes. Results show that, even when the training dataset can only be partially stored at local storage, MONARCH reduces TensorFlow's and PyTorch's training time by up to 28% and 37% for I/O-intensive models, respectively. Furthermore, MONARCH decreases the number of I/O operations submitted to the PFS by up to 56%.