2022
Autores
Pinho, AJ; Georgieva, P; Teixeira, LF; Sánchez, JA;
Publicação
Lecture Notes in Computer Science
Abstract
2022
Autores
Pereira, A; Carvalho, P; Corte Real, L;
Publicação
SIGNAL IMAGE AND VIDEO PROCESSING
Abstract
Color comparison is a key aspect in many areas of application, including industrial applications, and different metrics have been proposed. In many applications, this comparison is required to be closely related to human perception of color differences, thus adding complexity to the process. To tackle this, different approaches were proposed through the years, culminating in the CIEDE2000 formulation. In our previous work, we showed that simple color properties could be used to reduce the computational time of a color similarity decision process that employed this metric, which is recognized as having high computational complexity. In this paper, we show mathematically and experimentally that these findings can be adapted and extended to the recently proposed CIEDE2000 PF metric, which has been recommended by the CIE for industrial applications. Moreover, we propose new efficient models that not only achieve lower error rates, but also outperform the results obtained for the CIEDE2000 metric.
2022
Autores
Peixoto, PS; Carvalho, PH; Machado, A; Barreiros, L; Bordalo, AA; Oliveira, HP; Segundo, MA;
Publicação
CHEMOSENSORS
Abstract
Antibiotic resistance is a major health concern of the 21st century. The misuse of antibiotics over the years has led to their increasing presence in the environment, particularly in water resources, which can exacerbate the transmission of resistance genes and facilitate the emergence of resistant microorganisms. The objective of the present work is to develop a chemosensor for screening of sulfonamides in environmental waters, targeting sulfamethoxazole as the model analyte. The methodology was based on the retention of sulfamethoxazole in disks containing polystyrene divinylbenzene sulfonated sorbent particles and reaction with p-dimethylaminocinnamaldehyde, followed by colorimetric detection using a computer-vision algorithm. Several color spaces (RGB, HSV and CIELAB) were evaluated, with the coordinate a_star, from the CIELAB color space, providing the highest sensitivity. Moreover, in order to avoid possible errors due to variations in illumination, a color palette is included in the picture of the analytical disk, and a correction using the a_star value from one of the color patches is proposed. The methodology presented recoveries of 82-101% at 0.1 mu g and 0.5 mu g of sulfamethoxazole (25 mL), providing a detection limit of 0.08 mu g and a quantification limit of 0.26 mu g. As a proof of concept, application to in-field analysis was successfully implemented.
2022
Autores
Sousa, J; Pereira, T; Silva, F; Silva, MC; Vilares, AT; Cunha, A; Oliveira, HP;
Publicação
APPLIED SCIENCES-BASEL
Abstract
Lung cancer is one of the most common causes of cancer-related mortality, and since the majority of cases are diagnosed when the tumor is in an advanced stage, the 5-year survival rate is dismally low. Nevertheless, the chances of survival can increase if the tumor is identified early on, which can be achieved through screening with computed tomography (CT). The clinical evaluation of CT images is a very time-consuming task and computed-aided diagnosis systems can help reduce this burden. The segmentation of the lungs is usually the first step taken in image analysis automatic models of the thorax. However, this task is very challenging since the lungs present high variability in shape and size. Moreover, the co-occurrence of other respiratory comorbidities alongside lung cancer is frequent, and each pathology can present its own scope of CT imaging appearances. This work investigated the development of a deep learning model, whose architecture consists of the combination of two structures, a U-Net and a ResNet34. The proposed model was designed on a cross-cohort dataset and it achieved a mean dice similarity coefficient (DSC) higher than 0.93 for the 4 different cohorts tested. The segmentation masks were qualitatively evaluated by two experienced radiologists to identify the main limitations of the developed model, despite the good overall performance obtained. The performance per pathology was assessed, and the results confirmed a small degradation for consolidation and pneumocystis pneumonia cases, with a DSC of 0.9015 +/- 0.2140 and 0.8750 +/- 0.1290, respectively. This work represents a relevant assessment of the lung segmentation model, taking into consideration the pathological cases that can be found in the clinical routine, since a global assessment could not detail the fragilities of the model.
2022
Autores
Silva, F; Pereira, T; Neves, I; Morgado, J; Freitas, C; Malafaia, M; Sousa, J; Fonseca, J; Negrao, E; de Lima, BF; da Silva, MC; Madureira, AJ; Ramos, I; Costa, JL; Hespanhol, V; Cunha, A; Oliveira, HP;
Publicação
JOURNAL OF PERSONALIZED MEDICINE
Abstract
Advancements in the development of computer-aided decision (CAD) systems for clinical routines provide unquestionable benefits in connecting human medical expertise with machine intelligence, to achieve better quality healthcare. Considering the large number of incidences and mortality numbers associated with lung cancer, there is a need for the most accurate clinical procedures; thus, the possibility of using artificial intelligence (AI) tools for decision support is becoming a closer reality. At any stage of the lung cancer clinical pathway, specific obstacles are identified and motivate the application of innovative AI solutions. This work provides a comprehensive review of the most recent research dedicated toward the development of CAD tools using computed tomography images for lung cancer-related tasks. We discuss the major challenges and provide critical perspectives on future directions. Although we focus on lung cancer in this review, we also provide a more clear definition of the path used to integrate AI in healthcare, emphasizing fundamental research points that are crucial for overcoming current barriers.
2022
Autores
Ramos, B; Pereira, T; Silva, F; Costa, JL; Oliveira, HP;
Publicação
PATTERN RECOGNITION AND IMAGE ANALYSIS (IBPRIA 2022)
Abstract
An early diagnosis of cancer is essential for a good prognosis, and the identification of differentially expressed genes can enable a better personalization of the treatment plan that can target those genes in therapy. This work proposes a pipeline that predicts the presence of lung cancer and the subtype allowing the identification of differentially expressed genes for lung cancer adenocarcinoma and squamous cell carcinoma subtypes. A gradient boosted tree model is used for the classification tasks based on RNA-seq data. The analysis of gene expressions that better differentiate cancerous from normal tissue, and features that distinguish between lung subtypes is the main focus of the present work. Differential expressed genes are analyzed by performing hierarchical clustering in order to identify gene signatures that are commonly regulated and biological signatures associated with a specific subtype. This analysis highlighted patterns of commonly regulated genes already known in the literature as cancer or subtype-specific genes, and others that are not yet documented in the literature.
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