Cookies
O website necessita de alguns cookies e outros recursos semelhantes para funcionar. Caso o permita, o INESC TEC irá utilizar cookies para recolher dados sobre as suas visitas, contribuindo, assim, para estatísticas agregadas que permitem melhorar o nosso serviço. Ver mais
Aceitar Rejeitar
  • Menu
Publicações

Publicações por LIAAD

2015

From bargaining solutions to claims rules: A proportional approach

Autores
Giménez Gómez, JM; Osório, A; Peris, JE;

Publicação
Games

Abstract
Agents involved in a conflicting claims problem may be concerned with the proportion of their claims that is satisfied, or with the total amount they get. In order to relate both perspectives, we associate to each conflicting claims problem a bargaining-in-proportions set. Then, we obtain a correspondence between classical bargaining solutions and usual claims rules. In particular, we show that the constrained equal losses, the truncated constrained equal losses and the contested garment (Babylonian Talmud) rules can be obtained throughout the Nash bargaining solution. © 2015 by the authors.

2015

Some notes and comments on the efficient use of information in repeated games with Poisson signals

Autores
Osório, A;

Publicação
Operations Research Letters

Abstract
In the present paper we characterize the optimal use of Poisson signals to establish incentives in the "bad" and "good" news models of Abreu et al. (1991). In the former, for small time intervals the signals' quality is high and we observe a "selective" use of information; otherwise there is a "mass" use. In the latter, for small time intervals the signals' quality is low and we observe a "fine" use of information; otherwise there is a "non-selective" use.

2015

Synchronized age-related gene expression changes across multiple tissues in human and the link to complex diseases

Autores
Yang J.; Huang T.; Petralia F.; Long Q.; Zhang B.; Argmann C.; Zhao Y.; Mobbs C.V.; Schadt E.E.; Zhu J.; Tu Z.; Ardlie K.G.; Deluca D.S.; Segrè A.V.; Sullivan T.J.; Young T.R.; Gelfand E.T.; Trowbridge C.A.; Maller J.B.; Tukiainen T.; Lek M.; Ward L.D.; Kheradpour P.; Iriarte B.; Meng Y.; Palmer C.D.; Winckler W.; Hirschhorn J.; Kellis M.; MacArthur D.G.; Getz G.; Shablin A.A.; Li G.; Zhou Y.H.; Nobel A.B.; Rusyn I.; Wright F.A.; Lappalainen T.; Ferreira P.G.; Ongen H.; Rivas M.A.; Battle A.; Mostafavi S.; Monlong J.; Sammeth M.; Mele M.; Reverter F.; Goldman J.; Koller D.; Guigo R.; McCarthy M.I.; Dermitzakis E.T.; Gamazon E.R.; Konkashbaev A.; Nicolae D.L.; Cox N.J.; Flutre T.; Wen X.; Stephens M.; Pritchard J.K.; Lin L.; Liu J.; Brown A.; Mestichelli B.; Tidwell D.; Lo E.; Salvatore M.; Shad S.; Thomas J.A.; Lonsdale J.T.; Choi C.; Karasik E.; Ramsey K.; Moser M.T.; Foster B.A.; Gillard B.M.; Syron J.; Fleming J.; Magazine H.; Hasz R.; Walters G.D.; Bridge J.P.; Miklos M.; Sullivan S.; Barker L.K.; Traino H.; Mosavel M.; Siminoff L.A.; Valley D.R.; Rohrer D.C.; Jewel S.; Branton P.; Sobin L.H.; Qi L.; Hariharan P.; Wu S.; Tabor D.; Shive C.; Smith A.M.; Buia S.A.;

Publicação
Scientific Reports

Abstract
Aging is one of the most important biological processes and is a known risk factor for many age-related diseases in human. Studying age-related transcriptomic changes in tissues across the whole body can provide valuable information for a holistic understanding of this fundamental process. In this work, we catalogue age-related gene expression changes in nine tissues from nearly two hundred individuals collected by the Genotype-Tissue Expression (GTEx) project. In general, we find the aging gene expression signatures are very tissue specific. However, enrichment for some well-known aging components such as mitochondria biology is observed in many tissues. Different levels of cross-tissue synchronization of age-related gene expression changes are observed, and some essential tissues (e.g., heart and lung) show much stronger "co-aging" than other tissues based on a principal component analysis. The aging gene signatures and complex disease genes show a complex overlapping pattern and only in some cases, we see that they are significantly overlapped in the tissues affected by the corresponding diseases. In summary, our analyses provide novel insights to the co-regulation of age-related gene expression in multiple tissues; it also presents a tissue-specific view of the link between aging and age-related diseases.

2015

Biased allelic expression in human primary fibroblast single cells

Autores
Borel, C; Ferreira, PG; Santoni, F; Delaneau, O; Fort, A; Popadin, KY; Garieri, M; Falconnet, E; Ribaux, P; Guipponi, M; Padioleau, I; Carninci, P; Dermitzakis, ET; Antonarakis, SE;

Publicação
American Journal of Human Genetics

Abstract
The study of gene expression in mammalian single cells via genomic technologies now provides the possibility to investigate the patterns of allelic gene expression. We used single-cell RNA sequencing to detect the allele-specific mRNA level in 203 single human primary fibroblasts over 133,633 unique heterozygous single-nucleotide variants (hetSNVs). We observed that at the snapshot of analyses, each cell contained mostly transcripts from one allele from the majority of genes; indeed, 76.4% of the hetSNVs displayed stochastic monoallelic expression in single cells. Remarkably, adjacent hetSNVs exhibited a haplotype-consistent allelic ratio; in contrast, distant sites located in two different genes were independent of the haplotype structure. Moreover, the allele-specific expression in single cells correlated with the abundance of the cellular transcript. We observed that genes expressing both alleles in the majority of the single cells at a given time point were rare and enriched with highly expressed genes. The relative abundance of each allele in a cell was controlled by some regulatory mechanisms given that we observed related single-cell allelic profiles according to genes. Overall, these results have direct implications in cellular phenotypic variability. © 2015 The American Society of Human Genetics.

2015

Erratum: Short term exposure of beta cells to low concentrations of interleukin-1ß improves insulin secretion through focal adhesion and actin remodeling and regulation of gene expression (Journal of Biological Chemistr (2015) 290 (6653-6669))

Autores
Arous, C; Ferreira, PG; Dermitzakis, ET; Halban, PA;

Publicação
Journal of Biological Chemistry

Abstract

2015

The human transcriptome across tissues and individuals

Autores
Melé, M; Ferreira, PG; Reverter, F; DeLuca, DS; Monlong, J; Sammeth, M; Young, TR; Goldmann, JM; Pervouchine, DD; Sullivan, TJ; Johnson, R; Segrè, AV; Djebali, S; Niarchou, A; Wright, FA; Lappalainen, T; Calvo, M; Getz, G; Dermitzakis, ET; Ardlie, KG; Guigó, R;

Publicação
Science

Abstract
Transcriptional regulation and posttranscriptional processing underlie many cellular and organismal phenotypes. We used RNA sequence data generated by Genotype-Tissue Expression (GTEx) project to investigate the patterns of transcriptome variation across individuals and tissues. Tissues exhibit characteristic transcriptional signatures that show stability in postmortem samples. These signatures are dominated by a relatively small number of genes - which is most clearly seen in blood - though few are exclusive to a particular tissue and vary more across tissues than individuals. Genes exhibiting high interindividual expression variation include disease candidates associated with sex, ethnicity, and age. Primary transcription is the major driver of cellular specificity, with splicing playing mostly a complementary role; except for the brain, which exhibits a more divergent splicing program. Variation in splicing, despite its stochasticity, may play in contrast a comparatively greater role in defining individual phenotypes.

  • 314
  • 496