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Publicações

Publicações por João Paulo Cunha

2007

Epigauss: Lateralization value of a new automated analysis software based on spike dipole densities and spatial clustering

Autores
Fernandes, JM; Sales, F; Cunha, JPS;

Publicação
EPILEPSIA

Abstract

2007

BING: The Portuguese Brain Imaging Network Grid

Autores
Silva Cunha, JPS; Oliveira, I; Fernandes, JM; Campilho, A; Castelo Branco, M; Sousa, N; Pereira, AS;

Publicação
IBERGRID: 1ST IBERIAN GRID INFRASTRUCTURE CONFERENCE PROCEEDINGS

Abstract
The present paper describes the Portuguese National Brain Imaging Network designed to join R&D efforts of four Portuguese universities (Aveiro, Coimbra, Minho and Porto) in this emergent scientific area. This is an open initiative, already funded in 81.3% of its predicted investment (similar to 4.3 million E) for the first 5 years of operation, opened to the participation of other national institutions. This area of neuroscience uses several types of datasets from different medical imaging modalities and biosignals. MRI/MRS and fMRI volumes along with high-resolution EEG are our main targets for the first 5 years of operation and can easily reach the GByte size for a patient study. The Brain Imaging Network Grid (BING) will provide the support to a "neuroscientist-friendly" web portal where neuroscientists can submit brain imaging datasets for different analysis protocols. We will focus the present paper on the description of the consortium, its objectives and the network and Grid services architecture designs that will provide both the computational resources and the federated large data repository for the Portuguese national wide neuroscience scientific community.

2011

Compressed Domain Topographic Classification for Capsule Endoscopy

Autores
Marques, N; Dias, E; Cunha, JPS; Coimbra, M;

Publicação
2011 ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY (EMBC)

Abstract
In this paper we compare the classification accuracy of using compressed domain color (CDC) descriptors versus traditional full decoded images, for the purposes of topographic classification of wireless capsule endoscopy images. Results using a dataset of 26469 images, divided into stomach, small intestine and large intestine show a difference in classification accuracy below 1%. We also show that errors are mostly located near zone transitions (the pylorus and the ileocecal valve) and motivate the need for other visual descriptors (e. g. shape, motion) for addressing these specific areas. We conclude we can use the advantages of CDC in this type of classification with minor accuracy sacrifice.

2011

Associating ECG features with firefighter's activities

Autores
Pallauf, J; Gomes, P; Bras, S; Cunha, JPS; Coimbra, M;

Publicação
2011 ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY (EMBC)

Abstract
In this paper we associate features obtained from ECG signals with the expected levels of stress of real firefighters in action when facing specific events such as fires or car accidents. Five firefighters were monitored using wearable technology collecting ECG signals. Heart rate and heart rate variability features were analyzed in consecutive 5-min intervals during several types of events. A questionnaire was used to rank these types of events according to stress and fatigue and a measure of association was applied to compare this ranking to the ECG features. Results indicate associations between this ranking and both heart rate and heart rate variability features extracted in the time domain. Finally, an example of differences in inter personal responses to stressful events is shown and discussed, motivating future challenges within this research field.

2006

Topographic segmentation and transit time estimation for endoscopic capsule exams

Autores
Coimbra, M; Campos, P; Cunha, JPS;

Publicação
2006 IEEE International Conference on Acoustics, Speech and Signal Processing, Vols 1-13

Abstract
The endoscopic capsule is a recent medical technology with important clinical benefits but suffering from a practical handicap: long exam annotation times. This paper shows how support vector machines can be used to segment the gastrointestinal tract into its four major topographic areas, allowing the automatic estimation of the clinically relevant gastric and intestinal transit times. According to medical specialists, this can reduce exam annotation times by up to 12%.

2008

Automated topographic segmentation and transit time estimation in endoscopic capsule exams

Autores
Cunha, JPS; Coimbra, A; Campos, P; Soares, JM;

Publicação
IEEE TRANSACTIONS ON MEDICAL IMAGING

Abstract
Endoscopic capsule is a recent medical technology with important clinical benefits but suffering from a practical handicap: long exam annotation times. This paper proposes and compares two approaches (Bayesian and support vector machines) that can be used to segment the gastrointestinal tract into its four major topographic areas, allowing the automatic estimation of the clinically relevant gastric and intestinal sections and corresponding transit times. According to medical specialists, this can reduce exam annotation times by up to 12% (15 min). This automatic tool has been integrated into our CapView annotation software that is currently being used by three medical institutions.

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