2009
Autores
Marcuzzo, M; Quelhas, P; Mendonca, AM; Campilho, A;
Publicação
IMAGE ANALYSIS AND RECOGNITION, PROCEEDINGS
Abstract
The study of cell nuclei is fundamental for plant cell Biology research. To obtain information at; cellular level, researchers image cells' nuclei which were modified with fluorescence proteins, through laser scanning confocal microscopy. These images are normally noisy and suffer from high background fluorescence, making grey-scale segmentation approaches inadequate for a usable detection. To obtain a successful detection even at low contrast we investigate the use of a particular convergence filter, the Symmetric Sliding Band filter (SSBF), for cell detection. This filter is based on gradient convergence and not intensity. As such it can detect low contrast cell nuclei which otherwise would be lost in the background noise. Due to the characteristics of cell nuclei morphology, a symmetry constrain is integrated in the filter which corrects some inadequate detections and results in a filter response that is more discriminative. We evaluate the use of this filter for cell nuclei detection on the Arabidopsis thaliana root tip, where the nuclei were stained using yellow fluorescence protein. The resulting cell nuclei detection precision is 89%.
2009
Autores
Sousa, AV; Mendonca, AM; Campilho, A;
Publicação
PATTERN RECOGNITION AND IMAGE ANALYSIS, PROCEEDINGS
Abstract
This paper presents a method for automating the selection of the rejection rate of one-class classifiers aiming at optimizing the classifier performance. These classifiers are used in a new classification approach to deal with class imbalance in Thin-Layer Chromatography (TLC) patterns, which is due to the huge difference between the number of normal and pathological cases, as a consequence of the rarity of Lysosomal Storage Disorders (LSD) diseases. The classification is performed in two decision stages, both implemented using optimized one-class classifiers: the first stage aims at recognizing most of the normal samples; the outliers of this first decision level are presented to the second stage, which is a multiclassifier prepared to deal with both pathological and normal patterns. The results that were obtained proved that the proposed methodology is able to overcome some of the difficulties associated with the choice of the rejection rate of one-class classifiers, and generally contribute to the minimization of the imbalance problem in TLC pattern classification.
2008
Autores
Rocha, R; Campilho, A; Silva, J;
Publicação
IMAGE ANALYSIS AND RECOGNITION, PROCEEDINGS
Abstract
This paper proposes a new approach for the automatic segmentation of the carotid adventitia in longitudinal B-scans, with and without the presence of plaque. The top and bottom adventitia contours are jointly detected with a 3D dynamic programing scheme that searches for the best pair of boundaries according to a specified fuzzy cost function. Some discriminating features of the adventitia in B-mode images are used to reduce the attraction by other edges. The final contours are filtered with a smoothing spline fitting. The proposed approach was quantitatively evaluated in a set of 38 images. In order to avoid high correlation of the results, a maximum of two images was selected from each patient. The carotid boundaries manually traced by a medical expert were used as the ground truth. Several statistics show that the proposed algorithm gives good results in most of the cases, including many poor quality images. Examples of the detected contours are presented and compared with the ground truth.
2008
Autores
Sousa, AV; Mendonca, AM; Campilho, A;
Publicação
IMAGE ANALYSIS AND RECOGNITION, PROCEEDINGS
Abstract
This paper presents a new classification approach to deal with class imbalance in TLC patterns, which is due to the huge difference between the number of normal and pathological cases as a consequence of the rarity of LSD diseases. The proposed architecture is formed by two decision stages: the first is implemented by a one-class classifier aiming at recognizing most of the normal samples; the second stage is a hierarchical classifier which deals with the remaining outliers that are expected to contain the pathological cases and a small percentage of normal samples. We have also evaluated this architecture by a forest of classifiers, using the majority voting as a, rule to generate the final classification. The results that were obtained proved that this approach is able to overcome some of the difficulties associated with class imbalance.
2005
Autores
Sousa, AV; Mendonca, AM; Campilho, A; Aguiar, R; Miranda, CS;
Publicação
IMAGE ANALYSIS AND RECOGNITION
Abstract
Thin-Layer Chromatography images are used to detect and identify the presence of specific oligosaccharides, expressed by the existence, at different positions, of bands in the gel image. 1D gaussian deconvolution, commonly used for band detection, does not produce good results due to the large curvature observed in the bands. To overcome this uncertainty on the band position, we propose a novel feature extraction methodology that allows an accurate modeling of curved bands. The features are used to classify the data into two different classes, to differentiate normal from pathologic cases. The paper presents the developed methodology together with the analysis and discussion of the results.
2005
Autores
Vinhais, C; Campilho, A;
Publicação
IMAGE ANALYSIS AND RECOGNITION
Abstract
A method is proposed to segment digital posterior-anterior chest X-ray images. The segmentation is achieved through the registration of a deformable prior model, describing the anatomical structures of interest, to the X-ray image. The deformation of the model is performed using a deformation grid. A coarse matching of the model is done using anatomical landmarks automatically extracted from the image, and maps of oriented edges axe used to guide the deformation process, optimized with a probabilistic genetic algorithm. The method is applied to extract the ribcage and delineate the mediastinum and diaphragms. The segmentation is needed for defining the lungs region, used in computer-aided diagnosis systems.
The access to the final selection minute is only available to applicants.
Please check the confirmation e-mail of your application to obtain the access code.