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Publicações

Publicações por Jaime Cardoso

2020

Deep Aesthetic Assessment of Breast Cancer Surgery Outcomes

Autores
Goncalves, T; Silva, W; Cardoso, J;

Publicação
XV MEDITERRANEAN CONFERENCE ON MEDICAL AND BIOLOGICAL ENGINEERING AND COMPUTING - MEDICON 2019

Abstract
Breast cancer is a highly mutable and rapidly evolving disease, with a large worldwide incidence. Even though, it is estimated that approximately 90% of the cases are treatable and curable if detected on early staging and given the best treatment. Nowadays, with the existence of breast cancer routine screening habits, better clinical treatment plans and proper management of the disease, it is possible to treat most cancers with conservative approaches, also known as breast cancer conservative treatments (BCCT). With such a treatment methodology, it is possible to focus on the aesthetic results of the surgery and the patient's Quality of Life, which may influence BCCT outcomes. In the past, this assessment would be done through subjective methods, where a panel of experts would be needed to perform the assessment; however, with the development of computer vision techniques, objective methods, such as BAT (c) and BCCT.core, which perform the assessment based on asymmetry measurements, have been used. On the other hand, they still require information given by the user and none of them has been considered the gold standard for this task. Recently, with the advent of deep learning techniques, algorithms capable of improving the performance of traditional methods on the detection of breast fiducial points (required for asymmetry measurements) have been proposed and showed promising results. There is still, however, a large margin for investigation on how to integrate such algorithms in a complete application, capable of performing an end-to-end classification of the BCCT outcomes. Taking this into account, this thesis shows a comparative study between deep convolutional networks for image segmentation and two different quality-driven keypoint detection architectures for the detection of the breast contour. One that uses a deep learning model that has learned to predict the quality (given by the mean squared error) of an array of keypoints, and, based on this quality, applies the backpropagation algorithm, with gradient descent, to improve them; another which uses a deep learning model which was trained with the quality as a regularization method and that used iterative refinement, in each training step, to improve the quality of the keypoints that were fed into the network. Although none of the methods surpasses the current state of the art, they present promising results for the creation of alternative methodologies to address other regression problems in which the learning of the quality metric may be easier. Following the current trend in the field of web development and with the objective of transferring BCCT.core to an online format, a prototype of a web application for the automatic keypoint detection was developed and is presented in this document. Currently, the user may upload an image and automatically detect and/or manipulate its keypoints. This prototype is completely scalable and can be upgraded with new functionalities according to the user's needs.

2020

Evolution, current challenges, and future possibilities in the objective assessment of aesthetic outcome of breast cancer locoregional treatment

Autores
Cardoso, JS; Silva, W; Cardoso, MJ;

Publicação
BREAST

Abstract
The Breast Cancer overall survival rate has raised impressively in the last 20 years mainly due to improved screening and effectiveness of treatments. This increase in survival paralleled the awareness over the long-lasting impact of the side effects of treatments on patient quality of life, emphasizing the motto "a longer but better life for breast cancer patients". In breast cancer more strikingly than in other cancers, besides the side effects of systemic treatments, there is the visible impact of surgery and radiotherapy on patients' body image. This has sparked interest on the development of tools for the aesthetic evaluation of Breast Cancer locoregional treatments, which evolved from manual, subjective approaches to computerized, automated solutions. However, although studied for almost four decades, past solutions were not mature enough to become a standard. Recent advancements in machine learning have inspired trends toward deep-learning-based medical image analysis, also bringing new promises to the field of aesthetic assessment of locoregional treatments. In this paper, a review and discussion of the previous state-of-the-art methods in the field is conducted and the extracted knowledge is used to understand the evolution and current challenges. The aim of this paper is to delve into the current opportunities as well as motivate and guide future research in the aesthetic assessment of Breast Cancer locoregional treatments. (C) 2019 Elsevier Ltd.

2020

Fusion of Clinical, Self-Reported, and Multisensor Data for Predicting Falls

Autores
Silva, J; Sousa, I; Cardoso, JS;

Publicação
IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS

Abstract
Falls are among the frequent causes of the loss of mobility and independence in the elderly population. Given the global population aging, new strategies for predicting falls are required to reduce the number of their occurrences. In this study, a multifactorial screening protocol was applied to 281 community-dwelling adults aged over 65, and their 12-month prospective falls were annotated. Clinical and self-reported data, along with data from instrumented functional tests, involving inertial sensors and a pressure platform, were fused using early, late, and slow fusion approaches. For the early and late fusion, a classification pipeline was designed employing stratified sampling for the generation of the training and test sets. Grid search with cross-validation was used to optimize a set of feature selectors and classifiers. According to the slow fusion approach, each data source was mixed in the middle layers of a multilayer perceptron. The three studied fusion approaches yielded similar results for the majority of the metrics. However, if recall is considered to be more important than specificity, then the result of the late fusion approach providing a recall of 78.6% is better compared with the results achieved by the other two approaches.

2020

3D digital breast cancer models with multimodal fusion algorithms

Autores
Bessa, S; Gouveia, PF; Carvalho, PH; Rodrigues, C; Silva, NL; Cardoso, F; Cardoso, JS; Oliveira, HP; Cardoso, MJ;

Publicação
BREAST

Abstract
Breast cancer image fusion consists of registering and visualizing different sets of a patient synchronized torso and radiological images into a 3D model. Breast spatial interpretation and visualization by the treating physician can be augmented with a patient-specific digital breast model that integrates radiological images. But the absence of a ground truth for a good correlation between surface and radiological information has impaired the development of potential clinical applications. A new image acquisition protocol was designed to acquire breast Magnetic Resonance Imaging (MRI) and 3D surface scan data with surface markers on the patient's breasts and torso. A patient-specific digital breast model integrating the real breast torso and the tumor location was created and validated with a MRI/3D surface scan fusion algorithm in 16 breast cancer patients. This protocol was used to quantify breast shape differences between different modalities, and to measure the target registration error of several variants of the MRI/3D scan fusion algorithm. The fusion of single breasts without the biomechanical model of pose transformation had acceptable registration errors and accurate tumor locations. The performance of the fusion algorithm was not affected by breast volume. Further research and virtual clinical interfaces could lead to fast integration of this fusion technology into clinical practice. (C) 2020 The Authors. Published by Elsevier Ltd.

2020

Automated Development of Custom Fall Detectors: Position, Model and Rate Impact in Performance

Autores
Silva, J; Gomes, D; Sousa, I; Cardoso, JS;

Publicação
IEEE SENSORS JOURNAL

Abstract
The past years have witnessed a boost in fall detection-related research works, disclosing an extensive number of methodologies built upon similar principles but addressing particular use-cases. These use-cases frequently motivate algorithm fine-tuning, making the modelling stage a time and effort consuming process. This work contributes towards understanding the impact of several of the most frequent requirements for wearable-based fall detection solutions in their performance (usage positions, learning model, rate). We introduce a new machine learning pipeline, trained with a proprietary dataset, with a customisable modelling stage which enabled the assessment of performance over each combination of custom parameters. Finally, we benchmark a model deployed by our framework using the UMAFall dataset, achieving state-of-the-art results with an F1-score of 84.6% for the classification of the entire dataset, which included an unseen usage position (ankle), considering a sampling rate of 10 Hz and a Random Forest classifier.

2020

A novel approach to keypoint detection for the aesthetic evaluation of breast cancer surgery outcomes

Autores
Goncalves, T; Silva, W; Cardoso, MJ; Cardoso, JS;

Publicação
HEALTH AND TECHNOLOGY

Abstract
The implementation of routine breast cancer screening and better treatment strategies made possible to offer to the majority of women the option of breast conservation instead of a mastectomy. The most important aim of breast cancer conservative treatment (BCCT) is to try to optimize aesthetic outcome and implicitly, quality of life (QoL) without jeopardizing local cancer control and overall survival. As a consequence of the impact aesthetic outcome has on QoL, there has been an effort to try to define an optimal tool capable of performing this type of evaluation. Starting from the classical subjective aesthetic evaluation of BCCT (either by the patient herself or by a group of clinicians through questionnaires) to an objective aesthetic evaluation (where machine learning and computer vision methods are employed), leads to less variability and increasing reproducibility of results. Currently, there are some offline software applications available such as BAT(c) and BCCT.core, which perform the assessment based on asymmetry measurements that are computed based on semi-automatically annotated keypoints. In the literature, one can find algorithms that attempt to do the completely automatic keypoint annotation with reasonable success. However, these algorithms are very time-consuming. As the course of research goes more and more into the development of web software applications, these time-consuming tasks are not desirable. In this work, we propose a novel approach to the keypoints detection task treating the problem in part as image segmentation. This novel approach can improve both execution-time and results.

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