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Publicações

Publicações por Mário Cunha

2024

Spectral data augmentation for leaf nutrient uptake quantification

Autores
Martins, RC; Queirós, C; Silva, FM; Santos, F; Barroso, TG; Tosin, R; Cunha, M; Leao, M; Damásio, M; Martins, P; Silvestre, J;

Publicação
BIOSYSTEMS ENGINEERING

Abstract
Data scarcity is a hurdle for physiology-based precision agriculture. Measuring nutrient uptake by visible-near infrared spectroscopy implies collecting spectral and compositional data from low-throughput, such as inductively coupled plasma optical emission spectroscopy. This paper introduces data augmentation in spectroscopy by hybridisation for expanding real-world data into synthetic datasets statistically representative of the real data, allowing the quantification of macronutrients (N, P, K, Ca, Mg, and S) and micronutrients (Fe, Mn, Zn, Cu, and B). Partial least squares (PLS), local partial least squares (LocPLS), and self-learning artificial intelligence (SLAI) were used to determine the capacity to expand the knowledge base. PLS using only real-world data (RWD) cannot quantify some nutrients (N and Cu in grapevine leaves and K, Ca, Mg, S, and Cu in apple tree leaves). The synthetic dataset of the study allowed predicting real-world leaf composition of macronutrients (N, P, K, Ca, Mg and S) (Pearson coefficient correlation (R) 0.61-0.94 and standard error (SE) 0.04-0.05%) and micronutrients (Fe, Mn, Zn, Cu and B) (R 0.66-0.91 and SE 0.88-3.98 ppm) in grapevine leaves using LocPLS and SLAI. The synthetic dataset loses significance if the real-world counterpart has low representativity, resulting in poor quantifications of macronutrients (R 0.51-0.72 and SE 0.02-0.13%) and micronutrients (R 0.53-0.76 and SE 8.89-37.89 ppm), and not allowing S quantification (R = 0.37, SE = 0.01) in apple tree leaves. Representative real-world sampling makes data augmentation in spectroscopy very efficient in expanding the knowledge base and nutrient quantifications.

2024

Integrating Spectral Sensing and Systems Biology for Precision Viticulture: Effects of Shade Nets on Grapevine Leaves

Autores
Tosin, R; Portis, I; Rodrigues, L; Gonçalves, I; Barbosa, C; Teixeira, J; Mendes, RJ; Santos, F; Santos, C; Martins, R; Cunha, M;

Publicação
HORTICULTURAE

Abstract
This study investigates how grapevines (Vitis vinifera L.) respond to shading induced by artificial nets, focusing on physiological and metabolic changes. Through a multidisciplinary approach, grapevines' adaptations to shading are presented via biochemical analyses and hyperspectral data that are then combined with systems biology techniques. In the study, conducted in a 'Moscatel Galego Branco' vineyard in Portugal's Douro Wine Region during post-veraison, shading was applied and predawn leaf water potential (Psi pd) was then measured to assess water stress. Biochemical analyses and hyperspectral data were integrated to explore adaptations to shading, revealing higher chlorophyll levels (chlorophyll a-b 117.39% higher) and increased Reactive Oxygen Species (ROS) levels in unshaded vines (52.10% higher). Using a self-learning artificial intelligence algorithm (SL-AI), simulations highlighted ROS's role in stress response and accurately predicted chlorophyll a (R2: 0.92, MAPE: 24.39%), chlorophyll b (R2: 0.96, MAPE: 17.61%), and ROS levels (R2: 0.76, MAPE: 52.17%). In silico simulations employing flux balance analysis (FBA) elucidated distinct metabolic phenotypes between shaded and unshaded vines across cellular compartments. Integrating these findings provides a systems biology approach for understanding grapevine responses to environmental stressors. The leveraging of advanced omics technologies and precise metabolic models holds immense potential for untangling grapevine metabolism and optimizing viticultural practices for enhanced productivity and quality.

2024

Enhancing Grapevine Node Detection to Support Pruning Automation: Leveraging State-of-the-Art YOLO Detection Models for 2D Image Analysis

Autores
Oliveira, F; da Silva, DQ; Filipe, V; Pinho, TM; Cunha, M; Cunha, JB; dos Santos, FN;

Publicação
Sensors

Abstract
Automating pruning tasks entails overcoming several challenges, encompassing not only robotic manipulation but also environment perception and detection. To achieve efficient pruning, robotic systems must accurately identify the correct cutting points. A possible method to define these points is to choose the cutting location based on the number of nodes present on the targeted cane. For this purpose, in grapevine pruning, it is required to correctly identify the nodes present on the primary canes of the grapevines. In this paper, a novel method of node detection in grapevines is proposed with four distinct state-of-the-art versions of the YOLO detection model: YOLOv7, YOLOv8, YOLOv9 and YOLOv10. These models were trained on a public dataset with images containing artificial backgrounds and afterwards validated on different cultivars of grapevines from two distinct Portuguese viticulture regions with cluttered backgrounds. This allowed us to evaluate the robustness of the algorithms on the detection of nodes in diverse environments, compare the performance of the YOLO models used, as well as create a publicly available dataset of grapevines obtained in Portuguese vineyards for node detection. Overall, all used models were capable of achieving correct node detection in images of grapevines from the three distinct datasets. Considering the trade-off between accuracy and inference speed, the YOLOv7 model demonstrated to be the most robust in detecting nodes in 2D images of grapevines, achieving F1-Score values between 70% and 86.5% with inference times of around 89 ms for an input size of 1280 × 1280 px. Considering these results, this work contributes with an efficient approach for real-time node detection for further implementation on an autonomous robotic pruning system.

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