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Publicações

Publicações por Mário Cunha

2021

Unravelling Plant-Pathogen Interactions: Proximal Optical Sensing as an Effective Tool for Early Detect Plant Diseases

Autores
Reis-Pereira, M; Martins, RC; Silva, AF; Tavares, F; Santos, F; Cunha, M;

Publicação
Chemistry Proceedings

Abstract
This study analyzed the potential of proximal optical sensing as an effective approach for early disease detection. A compact, modular sensing system, combining direct UV–Vis spectroscopy with optical fibers, supported by a principal component analysis (PCA), was applied to evaluate the modifications promoted by the bacteria Xanthomonas euvesicatoria in tomato leaves (cv. cherry). Plant infection was achieved by spraying a bacterial suspension (108 CFU mL-1) until run-off occurred, and a similar approach was followed for the control group, where only water was applied. A total of 270 spectral measurements were performed on leaves, on five different time instances, including pre- and post-inoculation measurements. PCA was then applied to the acquired data from both healthy and inoculated leaves, which allowed their distinction and differentiation, three days after inoculation, when unhealthy plants were still asymptomatic.

2022

Unscrambling spectral interference and matrix effects in Vitis vinifera Vis-NIR spectroscopy: Towards analytical grade 'in vivo' sugars and acids quantification

Autores
Martins, RC; Barroso, TG; Jorge, P; Cunha, M; Santos, F;

Publicação
COMPUTERS AND ELECTRONICS IN AGRICULTURE

Abstract
Analytical grade 'in vivo' plant metabolic quantification using spectroscopy is a key enabling technology for precision agriculture.Current methods such as PLS, ANN and LS-SVM are non-optimal for resolving spectral interference and matrix effects to provide similar results to the analytical chemistry laboratory. This research presents a new self-learning artificial intelligence (SL-AI) method based on the search of covariance modes. These isolate the different modes of interference present in spectral data, allowing the consistent quantification of constituents. A review of the state-of-the-art methods with the figures of merit mean absolute standard error percentage (MASEP) and Pearson correlation coefficient (R) is presented for comparison and discussion. 707 grapes were quantified for glucose, fructose, malic and tartaric acids in five wine-making and one table grape varieties, and used to benchmark the new method against the state-of-the-art methodologies: partial least squares, local partial least squares, artificial neural networks and least squares support vector machines. SL-AI provides consistent quantifications, whereas previous methods exhibit data-driven performance dependence. Pearson correlations of 0.93 to 0.99 and MASEP of 3.70% to 7.33% were obtained with the new methodology. Local partial least squares, the method with the best benchmarks from literature, achieved correlations of 0.81 to 0.94 and MASEP of 8.00% to 13.4%. The covariance mode isolates a particular interference, providing a direct relationship between spectral inference and constituent concentrations, consistent with the Beer-Lambert law. Such quantifies non-dominant absorbance constituents (e.g. sugars and acids), which is a significant step towards 'in vivo' plant physiology-based precision agriculture.

2022

Benchmark of Deep Learning and a Proposed HSV Colour Space Models for the Detection and Classification of Greenhouse Tomato

Autores
Moreira, G; Magalhaes, SA; Pinho, T; dos Santos, FN; Cunha, M;

Publicação
AGRONOMY-BASEL

Abstract
The harvesting operation is a recurring task in the production of any crop, thus making it an excellent candidate for automation. In protected horticulture, one of the crops with high added value is tomatoes. However, its robotic harvesting is still far from maturity. That said, the development of an accurate fruit detection system is a crucial step towards achieving fully automated robotic harvesting. Deep Learning (DL) and detection frameworks like Single Shot MultiBox Detector (SSD) or You Only Look Once (YOLO) are more robust and accurate alternatives with better response to highly complex scenarios. The use of DL can be easily used to detect tomatoes, but when their classification is intended, the task becomes harsh, demanding a huge amount of data. Therefore, this paper proposes the use of DL models (SSD MobileNet v2 and YOLOv4) to efficiently detect the tomatoes and compare those systems with a proposed histogram-based HSV colour space model to classify each tomato and determine its ripening stage, through two image datasets acquired. Regarding detection, both models obtained promising results, with the YOLOv4 model standing out with an F1-Score of 85.81%. For classification task the YOLOv4 was again the best model with an Macro F1-Score of 74.16%. The HSV colour space model outperformed the SSD MobileNet v2 model, obtaining results similar to the YOLOv4 model, with a Balanced Accuracy of 68.10%.

2022

Machine Learning-Based Approaches for Predicting SPAD Values of Maize Using Multi-Spectral Images

Autores
Guo, YH; Chen, SZ; Li, XX; Cunha, M; Jayavelu, S; Cammarano, D; Fu, YS;

Publicação
REMOTE SENSING

Abstract
Precisely monitoring the growth condition and nutritional status of maize is crucial for optimizing agronomic management and improving agricultural production. Multi-spectral sensors are widely applied in ecological and agricultural domains. However, the images collected under varying weather conditions on multiple days show a lack of data consistency. In this study, the Mini MCA 6 Camera from UAV platform was used to collect images covering different growth stages of maize. The empirical line calibration method was applied to establish generic equations for radiometric calibration. The coefficient of determination (R-2) of the reflectance from calibrated images and ASD Handheld-2 ranged from 0.964 to 0.988 (calibration), and from 0.874 to 0.927 (validation), respectively. Similarly, the root mean square errors (RMSE) were 0.110, 0.089, and 0.102% for validation using data of 5 August, 21 September, and both days in 2019, respectively. The soil and plant analyzer development (SPAD) values were measured and applied to build the linear regression relationships with spectral and textural indices of different growth stages. The Stepwise regression model (SRM) was applied to identify the optimal combination of spectral and textural indices for estimating SPAD values. The support vector machine (SVM) and random forest (RF) models were independently applied for estimating SPAD values based on the optimal combinations. SVM performed better than RF in estimating SPAD values with R-2 (0.81) and RMSE (0.14), respectively. This study contributed to the retrieval of SPAD values based on both spectral and textural indices extracted from multi-spectral images using machine learning methods.

2022

The Phenolic Composition of Hops (Humulus lupulus L.) Was Highly Influenced by Cultivar and Year and Little by Soil Liming or Foliar Spray Rich in Nutrients or Algae

Autores
Afonso, S; Dias, MI; Ferreira, ICFR; Arrobas, M; Cunha, M; Barros, L; Rodrigues, MA;

Publicação
HORTICULTURAE

Abstract
The interest in expanding the production of hops outside the traditional cultivation regions, mainly motivated by the growth of the craft brewery business, justifies the intensification of studies into its adaptation to local growing conditions. In this study, four field trials were undertaken on a twenty-year-old hop garden, over periods of up to three years to assess the effect of important agro-environmental variation factors on hop phenol and phenolic composition and to establish its relationship with the elemental composition of hop cones. All the field trials were arranged as factorial designs exploring the combined effect of: (1) plots of different vigour plants x year; (2) plots of different plant vigor x algae- and nutrient-rich foliar sprays x year; (3) plot x liming x year; and (4) cultivars (Nugget, Cascade, Columbus) x year. Total phenols in hops, were significantly influenced by most of the experimental factors. Foliar spraying and liming were the factors that least influenced the measured variables. The year had the greatest effect on the accumulation of total phenols in hop cones in the different trials and may have contributed to interactions that often occurred between the factors under study. The year average for total phenol concentrations in hop cones ranged from 11.9 mg g(-1) to 21.2 mg g(-1). Significant differences in quantity and composition of phenolic compounds in hop cones were also found between cultivars. The phenolic compounds identified were mainly flavonols (quercetin and kaempferol glycosides) and phenolic carboxylic acids (p-coumaric and caffeic acids).

2022

Contactless Soil Moisture Mapping Using Inexpensive Frequency-Modulated Continuous Wave RADAR for Agricultural Purposes

Autores
Coutinho, RM; Sousa, A; Santos, F; Cunha, M;

Publicação
APPLIED SCIENCES-BASEL

Abstract
Soil Moisture (SM) is one of the most critical factors for a crop's growth, yield, and quality. Although Ground-Penetrating RADAR (GPR) is commonly used in satelite observation to analyze soil moisture, it is not cost-effective for agricultural applications. Automotive RADAR uses the concept of Frequency-Modulated Continuous Wave (FMCW) and is more competitive in terms of price. This paper evaluates the viability of using a cost-effective RADAR as a substitute for GPR for soil moisture content estimation. The research consisted of four experiments, and the results show that the RADAR's output signal and the soil moisture sensor SEN0193 have a high correlation with values as high as 0.93 when the SM is below 15%. Such results show that the tested sensor (and its cost-effective working principle) are able to determine soil water content (with certain limitations) in a non-intrusive, proximal sensing manner.

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