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Publicações

Publicações por BIO

2020

Personalized 3D Breast Cancer Models with Automatic Image Segmentation and Registration

Autores
BESSA, S; TEIXEIRA, JF; CARVALHO, PH; GOUVEIA, PF; OLIVEIRA, HP;

Publicação
Proceedings of 3DBODY.TECH 2020 - 11th International Conference and Exhibition on 3D Body Scanning and Processing Technologies, Online/Virtual, 17-18 November 2020

Abstract

2020

A Multi-dataset Approach for DME Risk Detection in Eye Fundus Images

Autores
Carvalho, CB; Pedrosa, J; Maia, C; Penas, S; Carneiro, A; Mendonça, L; Mendonça, AM; Campilho, A;

Publicação
Image Analysis and Recognition - 17th International Conference, ICIAR 2020, Póvoa de Varzim, Portugal, June 24-26, 2020, Proceedings, Part II

Abstract
Diabetic macular edema is a leading cause of visual loss for patients with diabetes. While diagnosis can only be performed by optical coherence tomography, diabetic macular edema risk assessment is often performed in eye fundus images in screening scenarios through the detection of hard exudates. Such screening scenarios are often associated with large amounts of data, high costs and high burden on specialists, motivating then the development of methodologies for automatic diabetic macular edema risk prediction. Nevertheless, significant dataset domain bias, due to different acquisition equipment, protocols and/or different populations can have significantly detrimental impact on the performance of automatic methods when transitioning to a new dataset, center or scenario. As such, in this study, a method based on residual neural networks is proposed for the classification of diabetic macular edema risk. This method is then validated across multiple public datasets, simulating the deployment in a multi-center setting and thereby studying the method’s generalization capability and existing dataset domain bias. Furthermore, the method is tested on a private dataset which more closely represents a realistic screening scenario. An average area under the curve across all public datasets of 0.891 ± 0.013 was obtained with a ResNet50 architecture trained on a limited amount of images from a single public dataset (IDRiD). It is also shown that screening scenarios are significantly more challenging and that training across multiple datasets leads to an improvement of performance (area under the curve of 0.911 ± 0.009). © Springer Nature Switzerland AG 2020.

2020

THE ROLE OF RADIOGENOMICS IN EGFR AND KRAS MUTATION STATUS PREDICTION AMONG NON-SMALL CELL LUNG CANCER PATIENTS

Autores
Freitas, C; Pereira, T; Pinheiro, G; Dias, C; Hespanhol, V; Costa, JL; Cunha, A; Oliveira, H;

Publicação
CHEST

Abstract

2020

Orofacial Trauma on the Anterior Zone of a Trumpet's Player Maxilla: Concept of the Oral Rehabilitation-A Case Report

Autores
Clemente, MP; Moreira, A; Carvalho, N; Bernardes, G; Ferreira, AP; Amarante, JM; Mendes, J;

Publicação
INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH

Abstract
Background: The occurrence of an orofacial trauma can originate health, social, economic and professional problems. A 13-year boy suffered the avulsion of tooth 11 and 21, lost at the scenario. Methods: Three intraoral appliances were manufactured: A Hawley appliance with a central expansion screw and two central incisors (1), trumpet edentulous anterior tooth appliance (2) and a customized splint (3) were designed as part of the rehabilitation procedure. Objectively assessing the sound quality of the trumpet player with these new devices in terms of its spectral, temporal, and spectro-temporal audio properties. A linear frequency response microphone was adopted for precision measurement of pitch, loudness, and timbre descriptors. Results: Pitch deviations may result from the different intra-oral appliances due to the alteration of the mouth cavity, respectively, the area occupied and modification/interaction with the anatomy. This investigation supports the findings that the intra-oral appliance which occupies less volume is the best solution in terms of sound quality. Conclusions: Young wind instrumentalists should have dental impressions of their teeth made, so their dentist has the most reliable anatomy of the natural teeth in case of an orofacial trauma. Likewise, the registration of their sound quality should be done regularly to have standard parameters for comparison.

2020

SnapKi-An Inertial Easy-to-Adapt Wearable Textile Device for Movement Quantification of Neurological Patients

Autores
Oliveira, A; Dias, D; Lopes, EM; Vilas Boas, MD; Cunha, JPS;

Publicação
SENSORS

Abstract
The development of wearable health systems has been the focus of many researchers who aim to find solutions in healthcare. Additionally, the large potential of textiles to integrate electronics, together with the comfort and usability they provide, has contributed to the development of smart garments in this area. In the field of neurological disorders with motor impairment, clinicians look for wearable devices that may provide quantification of movement symptoms. Neurological disorders affect different motion abilities thus requiring different needs in movement quantification. With this background we designed and developed an inertial textile-embedded wearable device that is adaptable to different movement-disorders quantification requirements. This adaptative device is composed of a low-power 9-axis inertial unit, a customised textile band and a web and Android cross application used for data collection, debug and calibration. The textile band comprises a snap buttons system that allows the attachment of the inertial unit, as well as its connection with the analog sensors through conductive textile. The resulting system is easily adaptable for quantification of multiple motor symptoms in different parts of the body, such as rigidity, tremor and bradykinesia assessments, gait analysis, among others. In our project, the system was applied for a specific use-case of wrist rigidity quantification during Deep Brain Stimulation surgeries, showing its high versatility and receiving very positive feedback from patients and doctors.

2020

Weakly-Supervised Classification of HER2 Expression in Breast Cancer Haematoxylin and Eosin Stained Slides

Autores
Oliveira, SP; Pinto, JR; Goncalves, T; Canas Marques, R; Cardoso, MJ; Oliveira, HP; Cardoso, JS;

Publicação
APPLIED SCIENCES-BASEL

Abstract
Human epidermal growth factor receptor 2 (HER2) evaluation commonly requires immunohistochemistry (IHC) tests on breast cancer tissue, in addition to the standard haematoxylin and eosin (H&E) staining tests. Additional costs and time spent on further testing might be avoided if HER2 overexpression could be effectively inferred from H&E stained slides, as a preliminary indication of the IHC result. In this paper, we propose the first method that aims to achieve this goal. The proposed method is based on multiple instance learning (MIL), using a convolutional neural network (CNN) that separately processes H&E stained slide tiles and outputs an IHC label. This CNN is pretrained on IHC stained slide tiles but does not use these data during inference/testing. H&E tiles are extracted from invasive tumour areas segmented with the HASHI algorithm. The individual tile labels are then combined to obtain a single label for the whole slide. The network was trained on slides from the HER2 Scoring Contest dataset (HER2SC) and tested on two disjoint subsets of slides from the HER2SC database and the TCGA-TCIA-BRCA (BRCA) collection. The proposed method attained83.3%classification accuracy on the HER2SC test set and 53.8% on the BRCA test set. Although further efforts should be devoted to achieving improved performance, the obtained results are promising, suggesting that it is possible to perform HER2 overexpression classification on H&E stained tissue slides.

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